Comparing WP_011937432.1 NCBI__GCF_000016745.1:WP_011937432.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6yakDDD C-terminal component of the split chain transketolase (see paper)
59% identity, 99% coverage: 5:312/312 of query aligns to 3:310/311 of 6yakDDD
6rjbB Human transketolase variant t382e (see paper)
41% identity, 98% coverage: 5:311/312 of query aligns to 314:621/622 of 6rjbB
Sites not aligning to the query:
4kxxA Human transketolase in covalent complex with donor ketose d- sedoheptulose-7-phosphate (see paper)
41% identity, 98% coverage: 5:310/312 of query aligns to 315:621/621 of 4kxxA
Sites not aligning to the query:
6ha3A Human transketolase variant e160q in covalent complex with donor ketose d-fructose-6-phosphate (see paper)
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 6ha3A
Sites not aligning to the query:
8waaA Human transketolase soaked with donor ketose d-xylulose
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 8waaA
Sites not aligning to the query:
8wa9A Human transketolase soaked with donor ketose d-fructose
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 8wa9A
Sites not aligning to the query:
4kxyA Human transketolase in complex with thdp analogue (r)-2-(1,2- dihydroxyethyl)-3-deaza-thdp (see paper)
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 4kxyA
Sites not aligning to the query:
4kxvA Human transketolase in covalent complex with donor ketose d-xylulose- 5-phosphate, crystal 1 (see paper)
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 4kxvA
Sites not aligning to the query:
4kxuA Human transketolase in covalent complex with donor ketose d-fructose- 6-phosphate (see paper)
41% identity, 98% coverage: 5:310/312 of query aligns to 314:620/620 of 4kxuA
Sites not aligning to the query:
8a4dA 1-deoxy-d-xylulose 5-phosphate synthase from pseudomonas aeruginosa with a thiamine analog inhibitor (see paper)
31% identity, 96% coverage: 11:311/312 of query aligns to 268:564/564 of 8a4dA
Sites not aligning to the query:
2o1sB 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from escherichia coli (see paper)
31% identity, 95% coverage: 1:296/312 of query aligns to 187:478/493 of 2o1sB
Sites not aligning to the query:
8a5kA Structural analysis of 1-deoxy-d-xylulose 5-phosphate synthase from pseudomonas aeruginosa and klebsiella pneumoniae reveals conformational changes upon cofactor binding (see paper)
31% identity, 92% coverage: 11:296/312 of query aligns to 268:549/562 of 8a5kA
Sites not aligning to the query:
8a45F Structural analysis of 1-deoxy-d-xylulose 5-phosphate synthase from pseudomonas aeruginosa with 2-acetyl thiamine diphosphate (see paper)
31% identity, 92% coverage: 11:296/312 of query aligns to 279:560/573 of 8a45F
Sites not aligning to the query:
2o1sA 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from escherichia coli (see paper)
32% identity, 92% coverage: 11:296/312 of query aligns to 241:522/536 of 2o1sA
Sites not aligning to the query:
P77488 1-deoxy-D-xylulose-5-phosphate synthase; 1-deoxyxylulose-5-phosphate synthase; DXP synthase; DXPS; EC 2.2.1.7 from Escherichia coli (strain K12) (see 2 papers)
32% identity, 92% coverage: 11:296/312 of query aligns to 325:606/620 of P77488
Sites not aligning to the query:
8bzxB 1-deoxy-d-xylulose 5-phosphate synthase from klebsiella pneumoniae (kpdxps),co-crystal with thiamine monophosphate analog (see paper)
31% identity, 94% coverage: 3:296/312 of query aligns to 265:554/568 of 8bzxB
Sites not aligning to the query:
8a9cB Structure of truncated 1-deoxy-d-xylulose 5-phosphate synthase (dxs) from klebsiella pneumoniae in complex with cofactor tpp
32% identity, 92% coverage: 11:296/312 of query aligns to 226:507/520 of 8a9cB
Sites not aligning to the query:
8bzxA 1-deoxy-d-xylulose 5-phosphate synthase from klebsiella pneumoniae (kpdxps),co-crystal with thiamine monophosphate analog (see paper)
32% identity, 92% coverage: 11:296/312 of query aligns to 251:532/546 of 8bzxA
Sites not aligning to the query:
6xxgBBB 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase (see paper)
30% identity, 90% coverage: 10:290/312 of query aligns to 239:515/539 of 6xxgBBB
Sites not aligning to the query:
8v9iA 1-deoxy-D-xylulose-5-phosphate synthase (see paper)
30% identity, 90% coverage: 10:290/312 of query aligns to 293:569/595 of 8v9iA
Sites not aligning to the query:
>WP_011937432.1 NCBI__GCF_000016745.1:WP_011937432.1
MSTMIATRDAYGETLAELGAENKNVVALDADLSGSTKTGVFAKKFPERFFNMGIAEANMV
GTAAGLAAVGKIPFLSTFAIFAAGRAWEQIRQSAAYPKANVKIVATHGGVTVGEDGGSHQ
SVEDIAIMRAIPNITVIVPADGVETKGAIRAAAAMKGPVYVRLGRNKVPTIFPEDHRFEI
GKGAELVAGSHMTFVTTGLMTAQAIAAAESLKKDGISARVVHIGTIKPLDQEIILKAARE
TGAIVTAEEHSVIGGLGGAVAELLGENCPTPMKRIGINDRFGTSGKAEELLKYFGLTPDC
LVDAAKEILSRK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory