SitesBLAST
Comparing WP_011939123.1 NCBI__GCF_000016745.1:WP_011939123.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3du4A Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8- diaminopelargonic acid synthase in bacillus subtilis (see paper)
50% identity, 99% coverage: 6:454/455 of query aligns to 2:444/448 of 3du4A
- active site: F17 (= F21), Y146 (= Y153), E217 (= E227), D251 (= D261), A254 (= A264), K280 (= K290), A417 (≠ V427)
- binding 7-keto-8-aminopelargonic acid: L82 (= L87), Y146 (= Y153), G315 (= G325), S317 (≠ T327), R410 (= R420)
- binding pyridoxal-5'-phosphate: S112 (≠ N117), G113 (= G118), A114 (≠ S119), Y146 (= Y153), H147 (= H154), E217 (= E227), D251 (= D261), V253 (= V263), A254 (= A264), K280 (= K290), H316 (= H326), S317 (≠ T327)
P53555 L-Lysine--8-amino-7-oxononanoate transaminase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; L-Lysine--8-amino-7-oxononanoate aminotransferase; EC 2.6.1.105 from Bacillus subtilis (strain 168) (see paper)
50% identity, 99% coverage: 6:454/455 of query aligns to 2:444/448 of P53555
- GA 113:114 (≠ GS 118:119) binding pyridoxal 5'-phosphate
- Y146 (= Y153) binding substrate
- K280 (= K290) modified: N6-(pyridoxal phosphate)lysine
- G315 (= G325) binding substrate
- HS 316:317 (≠ HT 326:327) binding pyridoxal 5'-phosphate
- R410 (= R420) binding substrate
6zhkA Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from methanocaldococcus jannaschii dsm 2661
49% identity, 98% coverage: 5:452/455 of query aligns to 1:435/438 of 6zhkA
6wnnA Bacillus subtilis bioa in complex with amino donor l-lys
47% identity, 98% coverage: 9:454/455 of query aligns to 2:416/420 of 6wnnA
- active site: F14 (= F21), Y143 (= Y153), D223 (= D261), K252 (= K290)
- binding (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid: F14 (= F21), W51 (= W59), S109 (≠ N117), G110 (= G118), A111 (≠ S119), Y143 (= Y153), H144 (= H154), D223 (= D261), V225 (= V263), K252 (= K290), R382 (= R420)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: H288 (= H326), S289 (≠ T327)
3dodA Crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis (see paper)
46% identity, 98% coverage: 9:454/455 of query aligns to 3:413/417 of 3dodA
- active site: F15 (= F21), E186 (= E227), D220 (= D261), A223 (= A264), K249 (= K290), A386 (≠ V427)
- binding pyridoxal-5'-phosphate: W52 (= W59), S110 (≠ N117), G111 (= G118), A112 (≠ S119), D220 (= D261), V222 (= V263), K249 (= K290), H285 (= H326), S286 (≠ T327)
5lhaA Amine transaminase crystal structure from an uncultivated pseudomonas species in the pmp-bound form
39% identity, 95% coverage: 18:449/455 of query aligns to 11:442/447 of 5lhaA
- active site: Y146 (= Y153), D253 (= D261), K282 (= K290), T319 (= T327)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G113 (= G118), S114 (= S119), Y146 (= Y153), H147 (= H154), G148 (= G155), E220 (= E227), D253 (= D261), K282 (= K290), Y318 (≠ H326), T319 (= T327)
5lh9D Amine transaminase crystal structure from an uncultivated pseudomonas species in the plp-bound (internal aldimine) form
39% identity, 95% coverage: 18:449/455 of query aligns to 13:444/449 of 5lh9D
- active site: Y148 (= Y153), D255 (= D261), K284 (= K290), T321 (= T327)
- binding pyridoxal-5'-phosphate: G115 (= G118), S116 (= S119), Y148 (= Y153), H149 (= H154), G150 (= G155), E222 (= E227), D255 (= D261), V257 (= V263), K284 (= K290)
6s54A Transaminase from pseudomonas fluorescens (see paper)
34% identity, 98% coverage: 2:449/455 of query aligns to 1:447/453 of 6s54A
- active site: M20 (≠ F21), Y152 (= Y153), D258 (= D261), K287 (= K290)
- binding pyridoxal-5'-phosphate: G119 (= G118), S120 (= S119), Y152 (= Y153), H153 (= H154), G154 (= G155), E225 (= E227), D258 (= D261), V260 (= V263), I261 (≠ A264), K287 (= K290)
6ed7A Crystal structure of 7,8-diaminopelargonic acid synthase bound to inhibitor mac13772
38% identity, 97% coverage: 12:454/455 of query aligns to 8:425/429 of 6ed7A
- active site: Y17 (≠ F21), Y144 (= Y153), D245 (= D261), K274 (= K290)
- binding 2-[(2-nitrophenyl)sulfanyl]acetohydrazide: Y17 (≠ F21), W52 (≠ I58), W52 (≠ I58), Y144 (= Y153), D147 (= D156), A217 (= A233), K274 (= K290), R391 (= R420), F393 (≠ L422), F393 (≠ L422)
- binding pyridoxal-5'-phosphate: G112 (= G118), S113 (= S119), Y144 (= Y153), H145 (= H154), D245 (= D261), I247 (≠ V263), K274 (= K290)
P12995 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; EC 2.6.1.62 from Escherichia coli (strain K12) (see 4 papers)
38% identity, 97% coverage: 12:454/455 of query aligns to 8:425/429 of P12995
- Y17 (≠ F21) mutation to F: Severely reduces the aminotransferase activity.
- W52 (≠ I58) binding substrate
- GS 112:113 (= GS 118:119) binding pyridoxal 5'-phosphate
- Y144 (= Y153) mutation to F: Severely reduces the aminotransferase activity.
- D147 (= D156) mutation to N: Loss of aminotransferase activity.
- D245 (= D261) binding pyridoxal 5'-phosphate
- R253 (= R269) mutation to A: Has only a small effect on the rate of reaction with DAPA.; mutation to K: Increases aminotransferase activity toward SAM.; mutation to M: Loss of aminotransferase activity.; mutation to Q: Increases aminotransferase activity toward SAM.
- K274 (= K290) binding substrate; modified: N6-(pyridoxal phosphate)lysine
- G307 (= G325) binding substrate
- PT 308:309 (≠ HT 326:327) binding pyridoxal 5'-phosphate
- R391 (= R420) binding substrate; mutation to A: Reduces aminotransferase activity.
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
34% identity, 96% coverage: 4:442/455 of query aligns to 1:405/420 of 6erkA
6io1B Crystal structure of a novel thermostable (s)-enantioselective omega- transaminase from thermomicrobium roseum (see paper)
35% identity, 96% coverage: 19:453/455 of query aligns to 18:446/448 of 6io1B
- active site: L20 (≠ F21), Y151 (= Y153), D257 (= D261), K286 (= K290)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G117 (≠ N117), G118 (= G118), A119 (≠ S119), N122 (≠ V122), Y151 (= Y153), H152 (= H154), D257 (= D261), V259 (= V263), I260 (≠ A264), K286 (= K290)
1mlzA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the trans-isomer of amiclenomycin. (see paper)
37% identity, 97% coverage: 12:454/455 of query aligns to 8:424/427 of 1mlzA
- active site: Y17 (≠ F21), Y144 (= Y153), E210 (= E227), D244 (= D261), A247 (= A264), K273 (= K290), Y397 (≠ V427)
- binding pyridoxal-5'-phosphate: G112 (= G118), S113 (= S119), Y144 (= Y153), H145 (= H154), D244 (= D261), I246 (≠ V263), K273 (= K290), P307 (≠ H326), T308 (= T327)
- binding trans-amiclenomycin: W52 (≠ I58), W53 (= W59), Y144 (= Y153), K273 (= K290), R390 (= R420), F392 (≠ L422)
1mlyA Crystal structure of 7,8-diaminopelargonic acid synthase in complex with the cis isomer of amiclenomycin (see paper)
37% identity, 97% coverage: 12:454/455 of query aligns to 8:424/427 of 1mlyA
- active site: Y17 (≠ F21), Y144 (= Y153), E210 (= E227), D244 (= D261), A247 (= A264), K273 (= K290), Y397 (≠ V427)
- binding cis-amiclenomycin: W52 (≠ I58), W53 (= W59), K273 (= K290), R390 (= R420), F392 (≠ L422)
- binding pyridoxal-5'-phosphate: G112 (= G118), S113 (= S119), Y144 (= Y153), H145 (= H154), D244 (= D261), I246 (≠ V263), K273 (= K290), P307 (≠ H326), T308 (= T327)
1dtyA Crystal structure of adenosylmethionine-8-amino-7-oxonanoate aminotransferase with pyridoxal phosphate cofactor.
37% identity, 97% coverage: 12:454/455 of query aligns to 8:425/429 of 1dtyA
- active site: Y17 (≠ F21), Y144 (= Y153), E211 (= E227), D245 (= D261), A248 (= A264), K274 (= K290), Y398 (≠ V427)
- binding pyridoxal-5'-phosphate: G112 (= G118), S113 (= S119), Y144 (= Y153), H145 (= H154), D245 (= D261), I247 (≠ V263), K274 (= K290)
1qj3A Crystal structure of 7,8-diaminopelargonic acid synthase in complex with 7-keto-8-aminopelargonic acid (see paper)
37% identity, 97% coverage: 12:454/455 of query aligns to 8:413/416 of 1qj3A
- active site: Y17 (≠ F21), Y144 (= Y153), E201 (= E227), D235 (= D261), A238 (= A264), K264 (= K290), Y386 (≠ V427)
- binding 7-keto-8-aminopelargonic acid: Y17 (≠ F21), W52 (≠ I58), Y144 (= Y153), K264 (= K290), R379 (= R420), F381 (≠ L422)
- binding pyridoxal-5'-phosphate: G112 (= G118), S113 (= S119), Y144 (= Y153), H145 (= H154), G146 (= G155), D235 (= D261), I237 (≠ V263), A238 (= A264), K264 (= K290)
6gwiB The crystal structure of halomonas elongata amino-transferase (see paper)
34% identity, 99% coverage: 4:454/455 of query aligns to 1:450/450 of 6gwiB
- active site: F18 (= F21), Y149 (= Y153), D255 (= D261), K284 (= K290)
- binding pyridoxal-5'-phosphate: S115 (≠ N117), G116 (= G118), S117 (= S119), Y149 (= Y153), H150 (= H154), G151 (= G155), E222 (= E227), D255 (= D261), V257 (= V263), I258 (≠ A264), K284 (= K290)
6g4dB Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp (see paper)
33% identity, 99% coverage: 7:455/455 of query aligns to 1:447/453 of 6g4dB
- active site: Y15 (≠ F21), Y146 (= Y153), D253 (= D261), K282 (= K290)
- binding pyridoxal-5'-phosphate: S112 (≠ N117), G113 (= G118), S114 (= S119), Y146 (= Y153), H147 (= H154), E220 (= E227), D253 (= D261), V255 (= V263), I256 (≠ A264), K282 (= K290)
6g4fA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with pmp (see paper)
33% identity, 99% coverage: 7:455/455 of query aligns to 1:447/451 of 6g4fA
- active site: Y15 (≠ F21), Y146 (= Y153), D253 (= D261), K282 (= K290)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: S112 (≠ N117), G113 (= G118), S114 (= S119), Y146 (= Y153), H147 (= H154), E220 (= E227), D253 (= D261), V255 (= V263), I256 (≠ A264), K282 (= K290)
6g4eA Crystal structure of the omega transaminase from pseudomonas jessenii in complex with plp and 6-aminohexanoate (6-aca) (see paper)
33% identity, 99% coverage: 7:455/455 of query aligns to 1:447/451 of 6g4eA
- active site: Y15 (≠ F21), Y146 (= Y153), D253 (= D261), K282 (= K290)
- binding 6-aminohexanoic acid: K282 (= K290), R412 (= R420), M414 (≠ L422)
- binding pyridoxal-5'-phosphate: S112 (≠ N117), G113 (= G118), S114 (= S119), Y146 (= Y153), H147 (= H154), E220 (= E227), D253 (= D261), V255 (= V263), I256 (≠ A264), K282 (= K290)
Query Sequence
>WP_011939123.1 NCBI__GCF_000016745.1:WP_011939123.1
MKSIDTKTLQEYDRRYVWHPFTQMKEWEEEAPLVIERGEGSFIIDSDGNRYLDGVAAIWT
NVHGHCKKEINEAIKAQVDRLEHSTLLGLTNDKAALLAKRLVEIAPPGLNKVFYSDNGST
AVEIGVKMAFQFQQHRGGRFARKTRFISFTNAYHGDTVGAMSVGGIDIYHEVYSPLLFST
IKSPAPYCYRCRLCAGKDESTCGLLCLKELERLMAAHADELAGLVIEPLVQGAGGMIVQP
AGFVRKVRELCDKYDILMIADEVAVGFGRTGAMFACEKEGITPDIMALSKGITAGYLPLA
ATLTTQRVYDAFLGEYKELKTFFHGHTFTGNPIACAAALASLDLFEKEQLLSNLQPKIDY
LKKRLSSLKQLDHVGDIRQEGMLGGIELVRDKETREPYPWEERIGVQVCKEARKHGLFLR
PLGNVIVVFPPLSISLSELEQLMDGIEESIREITR
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory