SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_011940726.1 NCBI__GCF_000016745.1:WP_011940726.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

Q72J02 Sulfur carrier protein adenylyltransferase; E1-like protein TtuC; Sulfur carrier protein MoaD adenylyltransferase; Sulfur carrier protein ThiS adenylyltransferase; Sulfur carrier protein TtuB adenylyltransferase; tRNA two-thiouridine-synthesizing protein C; EC 2.7.7.80; EC 2.7.7.73; EC 2.7.7.- from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see paper)
48% identity, 94% coverage: 3:257/270 of query aligns to 4:263/271 of Q72J02

query
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Q72J02

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C192 (= C186) modified: Glycyl cysteine thioester (Cys-Gly) (interchain with G-Cter in TtuB); mutation to S: Not able to form a thioester complex with TtuB.

Sites not aligning to the query:

268 C→S: Still able to form a thioester complex with TtuB.

D4GSF3 SAMP-activating enzyme E1; Ubiquitin-like activating enzyme of archaea; Ubl-activating enzyme; EC 2.7.7.- from Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) (see paper)
49% identity, 91% coverage: 2:248/270 of query aligns to 5:250/270 of D4GSF3

query
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D4GSF3

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C188 (= C186) mutation to S: Loss of activity since this mutant is not able to complement a ubaA deletion in trans to restore sampylation and tRNA thiolation.

Q9VLJ8 Adenylyltransferase and sulfurtransferase MOCS3; Molybdenum cofactor synthesis protein 3; Ubiquitin activating enzyme 4; EC 2.7.7.80; EC 2.8.1.11 from Drosophila melanogaster (Fruit fly) (see paper)
42% identity, 94% coverage: 2:255/270 of query aligns to 64:318/453 of Q9VLJ8

query
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Q9VLJ8

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Sites not aligning to the query:

62 modified: Phosphothreonine

O95396 Adenylyltransferase and sulfurtransferase MOCS3; Molybdenum cofactor synthesis protein 3; Molybdopterin synthase sulfurylase; MPT synthase sulfurylase; EC 2.7.7.80; EC 2.8.1.11 from Homo sapiens (Human) (see 5 papers)
43% identity, 95% coverage: 2:257/270 of query aligns to 55:311/460 of O95396

query
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O95396

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158:238 (vs. 105:185, 40% identical) Interaction with NFS1
C239 (= C186) mutation to A: Impairs sulfurtransferase activity.

Sites not aligning to the query:

316 modified: Disulfide link with 324; C→A: Does not affect sulfurtransferase activity.
324 modified: Disulfide link with 316; C→A: Does not affect sulfurtransferase activity.
365 C→A: Does not affect sulfurtransferase activity.
412 active site, Cysteine persulfide intermediate; for sulfurtransferase activity; modified: Cysteine persulfide; C→A: Abolishes sulfurtransferase activity.
413 K→R: Does not affect sulfurtransferase specificity and activity.
414 L→K: Does not affect sulfurtransferase specificity and activity.
415 G→A: Does not affect sulfurtransferase specificity and activity.
416 N→V: Does not affect sulfurtransferase specificity and activity.
417 D→R: Results in 470-fold increased activity.; D→T: Results in 90-fold increased activity.
458 P→G: Does not affect sulfurtransferase specificity and activity.
460 Y→A: Does not affect sulfurtransferase specificity and activity.

O59954 Adenylyltransferase and sulfurtransferase uba4; Common component for nitrate reductase and xanthine dehydrogenase protein F; Ubiquitin-like protein activator 4; EC 2.7.7.80; EC 2.8.1.11 from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (Aspergillus nidulans) (see paper)
41% identity, 93% coverage: 2:253/270 of query aligns to 61:325/482 of O59954

query
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O59954

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I

N

S

D

D

A

T

C

A

V

V

L

L

A

L

G

G

K

K

P

P

Y

L

S

V

H

S

G

A

G

S

I

A

L

L

Q

R

F

T

D
x
E

G

G

Q

Q

T

L

I

M

T

V

I

L

E

N

-

N

-

P

-

Q

-

P

P

P

G

G

K

D

S

K

-

T

-

G

P

P

C

C

Y

Y

R

R

C

C

L

V

F

F

P

P

A

K

P

P

K

A

D

N

A

S

I

V

P

T

T

S

C

C

S

A

T

D

A

G

G

G

V

I

I

L

G

G

V

P

L

V

P

V

G
|
G

V

T

I

M

G

G

T

V

I

L

Q

Q

A

A

T

S

E

E

A

A

I

I

K

K

Y

V

L

L

L

T

G

S

K

A

G

G

E

E

L

S

L

V

T

E

G

A

-

T

-

P

R

S

L

L

T

I

Y

F

N

S

A

A

L

Y

R

S

M

S

-

P

R

Q

F

F

R

R

E

T

V

I

P

K

V

L

K

R

-

S

K

R

S

R

A

P

K

N

C

C

P

A

I

V

C

C

G

S

E

A

N

E

P

A

T

T

I

V

T

T

G82 (= G23) mutation to D: In cnxF21ts and cnxF24ts; temperature-sensitive mutant. Impairs molybdopterin biosynthesis.
G100 (= G41) mutation to S: In cnxF1285; impairs molybdopterin biosynthesis.
R130 (= R71) mutation to Q: In cnxF200; impairs molybdopterin biosynthesis.
C185 (≠ G126) mutation to Y: In cnxF472; impairs molybdopterin biosynthesis.
E215 (≠ D156) mutation to K: In cnxF119; impairs molybdopterin biosynthesis.
G264 (= G197) mutation to S: In cnxF142ts; temperature-sensitive mutant. Impairs molybdopterin biosynthesis.

P12282 Molybdopterin-synthase adenylyltransferase; MoaD protein adenylase; Molybdopterin-converting factor subunit 1 adenylase; Sulfur carrier protein MoaD adenylyltransferase; EC 2.7.7.80 from Escherichia coli (strain K12) (see 2 papers)
40% identity, 91% coverage: 2:248/270 of query aligns to 4:249/249 of P12282

query
sites
P12282

L

L

S

S

E

D

E

Q

Q

E

I

M

A

L

R

R

Y

Y

S

N

R
|
R

H

Q

I

I

L

L

K

R

E

G

V

F

G

D

G

F

K

D

G

G

Q

Q

K

E

K

A

L

L

F

K

D

D

G

S

R

R

V

V

M

L

I

I

I

V

G

G

A

L

G

G

L

L

G

G

S
x
C

P

A

I

A

A

S

L

Q

Y

Y

L

L

A

A

A

S

A

A

G

G

V

V

G

G

T

N

I

L

G

T

I

L

A

L

D

D

A

F

D

D

V

T

V

V

D

S

L

L

S

S

N

N

L

L

Q

Q

R
|
R

Q

Q

V

T

I

L

H

H

Q

S

T

D

K

A

D

T

V

V

G

G

I

Q

A

P

K

K

V

V

L

E

S

S

A

A

K

R

E

D

K

A

M

L

Q

T

A

R

I

I

N

N

P

P

E

H

L

I

K

A

V

I

N

T

T

P

Y

V

Q

N

E

A

W

L

I

L

S

D

A

D

A

A

N

E

I

L

A

A

D

A

I

L

I

I

S

A

E

E

Y

H

D

D

F

L

V

V

I

L

D

D

G
x
C

T

T

D
|
D

N

N

F

V

A

A

A

V

K

R

F

N

L

Q

I

L

N

N

D

A

A

G

C
|
C

V

F

L

A

A

A

G

K

K

V

P

P

Y

L

S

V

H

S

G

G

G

A

I

A

L

I

Q

R

F

M

D

E

G

G

Q

Q

-

I

T

T

I

V

T

F

I

T

E

Y

P

Q

G

D

K

G

S

E

P

P

C
|
C

Y

Y

R

R

C
|
C

L

L

F

-

P

-

A

S

P

R

P

L

P

F

K

G

D

E

A

N

I

A

P

L

T

T

C
|
C

S

V

T

E

A

A

G

G

V

V

I

M

G

A

V

P

L

L

P

I

G

G

V

V

I

I

G

G

T

S

I

L

Q

Q

A

A

T

M

E

E

A

A

I

I

K

K

Y

M

L

L

L

A

G

G

K

Y

G

G

E

K

L

P

L

A

T

S

G

G

R

K

L

I

L

V

T

M

Y

Y

N

D

A

A

L

M

R

T

M
x
C

R

Q

F

F

R

R

E

E

V

M

P

K

V

L

K

M

K

R

S

N

A

P

K

G

C
|
C

P

E

I

V

C
|
C

G

G

E

Q

R14 (= R12) mutation R->A,K: No effect.; mutation to A: No activity; when associated with A-73.
C44 (≠ S42) mutation to A: No effect.
R73 (= R71) mutation to A: No effect. No activity; when associated with A-14.; mutation to K: Substantially reduced activity.
C128 (≠ G126) mutation to A: No effect.; mutation to Y: No activity.
D130 (= D128) mutation to A: No activity.; mutation to E: Substantially reduced activity.
C142 (= C140) mutation to A: No effect.
C172 (= C169) mutation to A: No zinc bound and no enzyme activity.
C175 (= C172) mutation to A: No zinc bound and no enzyme activity.
C187 (= C186) mutation to A: No effect.
C231 (≠ M230) mutation to A: No effect.
C244 (= C243) mutation to A: No zinc bound and almost no enzyme activity.
C247 (= C246) mutation to A: No zinc bound and almost no enzyme activity.

P38820 Adenylyltransferase and sulfurtransferase UBA4; Needs CLA4 to survive protein 3; Ubiquitin-like protein activator 4; EC 2.7.7.-; EC 2.8.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 4 papers)
40% identity, 94% coverage: 2:254/270 of query aligns to 39:297/440 of P38820

query
sites
P38820

L

L

S

S

E

L

E

E

Q

E

I

Y

A

Q

R

R

Y

Y

S

G

R

R

H

Q

I

M

I

I

L

V

K

E

E

E

V

T

G

G

-

V

K

A

G

G

Q

Q

K

V

K

K

L

L

F

K

D

N

G

T

R

K

V

V

M

L

I

V

G

G

A

A

G

G

L

L

G

G

S

C

P

P

I

A

A

L

L

P

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

Q

I

I

G

G

I

I

A

V

D

D

A

N

D

D

V

V

D

E

L

T

S

S

N

N

L

L

Q

H

R

R

Q

Q

V

V

I

L

H

H

Q

D

T

S

K

S

D

R

V

V

G

G

I

M

A

L

K

K

V

C

L

E

S

S

A

A

K

R

E

Q

K

Y

M

I

Q

T

A

K

I

L

N

N

P

P

E

H

L

I

K

N

V

V

N

V

T

T

Y

Y

Q

P

E

V

W

R

I

L

S

N

A

S

N

N

I

A

A

F

D

D

I

I

I

F

S

K

E

G

Y

Y

D

N

F

Y

V

I

I

L

D

D

G

C

T

T

D

D

N

S

F

P

A

L

A

T

K

R

F

Y

L

L

I

V

N

S

D

D

A

V

C

A

V

V

L

N

A

L

G

G

K

I

P

T

Y

V

S

V

H

S

G

A

G

S

I

G

L

L

Q

G

F

T

D

E

G

G

Q

Q

-

L

T

T

I

I

T

L

I

N

E

F

P

N

G

N

K

I

S

G

P

P

C

C

Y

Y

R

R

C

C

L

F

F

Y

P

P

A

T

P

P

K

P

D

N

A

A

I

V

P

T

T

S

C
|
C

S

Q

T

E

A

G

G

G

V

V

I

I

G

G

V

P

L

C

P

I

G

G

V

L

I

V

G

G

T

T

I

M

Q

M

A

A

T

V

E

E

A

T

I

L

K

K

Y

L

L

I

L

L

G

G

-

I

-

Y

K

T

G

N

E

E

L

N

L

F

T

S

G

P

R

F

L

L

L

M

T

L

Y

Y

N

S

A

G

L

F

-

P

R

Q

M

Q

R

S

F

L

R

R

E

T

V

F

P

K

V

M

K

R

-

G

K

R

S

Q

A

E

K

K

C

C

P

L

I

C

C

C

G

G

E

K

N

N

P

R

T

T

I

I

T

T

E

K

C225 (= C186) mutation C->A,S: Abolishes adenylyltransferase activity but not sulfurtransferase activity.

Sites not aligning to the query:

397 mutation C->A,S: Abolishes sulfurtransferase activity but not adenylyltransferase activity.

1jwbB Structure of the covalent acyl-adenylate form of the moeb-moad protein complex (see paper)
40% identity, 91% coverage: 2:247/270 of query aligns to 3:240/240 of 1jwbB

query
sites
1jwbB

L

L

S

S

E

D

E

Q

Q

E

I

M

A

L

R

R

Y

Y

S

N

R
|
R

H

Q

I

I

L

L

K

R

E

G

V

F

G

D

G

F

K

D

G

G

Q

Q

K

E

K

A

L

L

F

K

D

D

G

S

R

R

V

V

M

L

I

I

I

V

G
|
G

A

L

G
|
G

L

L

G

G

S

C

P

A

I

A

A

S

L

Q

Y

Y

L

L

A

A

A

S

A

A

G

G

V

V

G

G

T

N

I

L

G

T

I

L

A

L

D
|
D

A
x
F

D

D

V

T

V

V

D

S

L

L

S

S

N

N

L

L

Q

Q

R

R

Q

Q

V

T

I

L

H

H

Q

S

T

D

K

A

D

T

V

V

G

G

I

Q

A

P

K
|
K

V

V

L

E

S

S

A

A

K

R

E

D

K

A

M

L

Q

T

A

R

I

I

N

N

P

P

E

H

L

I

K

A

V

I

N

T

T

P

Y

V

Q

N

E

A

W
x
L

I

L

S

D

A

D

A

A

N

E

I

L

A

A

D

A

I

L

I

I

S

A

E

E

Y

H

D

D

F

L

V

V

I

L

D

D

G
x
C

T
|
T

D
|
D

N
|
N

F

V

A

A

A
x
V

K

R

F

N

L

Q

I

L

N

N

D

A

A

G

C

C

V

F

L

A

A

A

G

K

K

V

P

P

Y

L

S

V

H

S

G

G

G

A

I

A

L

I

Q

R

F

M

D

E

G

G

Q

Q

-

I

T

T

I

V

T

F

I

T

E

Y

P

Q

G

D

K

G

S

E

P

P

C
|
C

Y

Y

R

R

C

C

L

L

F

S

P

-

A

-

P

-

K

-

D

-

A

-

I

-

P

R

T

L

C

F

S

G

T

E

A

A

G

G

V

V

I

M

G

A

V

P

L

L

P

I

G

G

V

V

I

I

G

G

T

S

I

L

Q

Q

A

A

T

M

E

E

A

A

I

I

K

K

Y

M

L

L

L

A

G

G

K

Y

G

G

E

K

L

P

L

A

T

S

G

G

R

K

L

I

L

V

T

M

Y

Y

N

D

A

A

L

M

R

T

M

C

R

Q

F

F

R

R

E

E

V

M

P

K

V

L

K

M

K

R

S

N

A

P

K

G

C
|
C

P

E

I

V

C
|
C

G

G

active site: R13 (= R12), D129 (= D128)
binding adenosine monophosphate: G37 (= G36), G39 (= G38), G40 (= G39), D61 (= D60), F62 (≠ A61), K85 (= K84), L108 (≠ W107), C127 (≠ G126), T128 (= T127), D129 (= D128), N130 (= N129), V133 (≠ A132)
binding zinc ion: C171 (= C169), C236 (= C243), C239 (= C246)

1jw9B Structure of the native moeb-moad protein complex (see paper)
40% identity, 91% coverage: 2:247/270 of query aligns to 3:240/240 of 1jw9B

query
sites
1jw9B

L

L

S

S

E

D

E

Q

Q

E

I

M

A

L

R

R

Y

Y

S

N

R
|
R

H

Q

I

I

L

L

K

R

E

G

V

F

G

D

G

F

K

D

G

G

Q

Q

K

E

K

A

L

L

F

K

D

D

G

S

R

R

V

V

M

L

I

I

I

V

G

G

A

L

G

G

L

L

G

G

S

C

P

A

I

A

A

S

L

Q

Y

Y

L

L

A

A

A

S

A

A

G

G

V

V

G

G

T

N

I

L

G

T

I

L

A

L

D

D

A

F

D

D

V

T

V

V

D

S

L

L

S

S

N

N

L

L

Q

Q

R

R

Q

Q

V

T

I

L

H

H

Q

S

T

D

K

A

D

T

V

V

G

G

I

Q

A

P

K

K

V

V

L

E

S

S

A

A

K

R

E

D

K

A

M

L

Q

T

A

R

I

I

N

N

P

P

E

H

L

I

K

A

V

I

N

T

T

P

Y

V

Q

N

E

A

W

L

I

L

S

D

A

D

A

A

N

E

I

L

A

A

D

A

I

L

I

I

S

A

E

E

Y

H

D

D

F

L

V

V

I

L

D

D

G

C

T

T

D
|
D

N

N

F

V

A

A

A

V

K

R

F

N

L

Q

I

L

N

N

D

A

A

G

C

C

V

F

L

A

A

A

G

K

K

V

P

P

Y

L

S

V

H

S

G

G

G

A

I

A

L

I

Q

R

F

M

D

E

G

G

Q

Q

-

I

T

T

I

V

T

F

I

T

E

Y

P

Q

G

D

K

G

S

E

P

P

C
|
C

Y

Y

R

R

C

C

L

L

F

S

P

-

A

-

P

-

K

-

D

-

A

-

I

-

P

R

T

L

C

F

S

G

T

E

A

A

G

G

V

V

I

M

G

A

V

P

L

L

P

I

G

G

V

V

I

I

G

G

T

S

I

L

Q

Q

A

A

T

M

E

E

A

A

I

I

K

K

Y

M

L

L

L

A

G

G

K

Y

G

G

E

K

L

P

L

A

T

S

G

G

R

K

L

I

L

V

T

M

Y

Y

N

D

A

A

L

M

R

T

M

C

R

Q

F

F

R

R

E

E

V

M

P

K

V

L

K

M

K

R

S

N

A

P

K

G

C
|
C

P

E

I

V

C
|
C

G

G

active site: R13 (= R12), D129 (= D128)
binding zinc ion: C171 (= C169), C236 (= C243), C239 (= C246)

1zfnA Structural analysis of escherichia coli thif (see paper)
39% identity, 91% coverage: 2:247/270 of query aligns to 1:244/244 of 1zfnA

query
sites
1zfnA

L

M

S

N

E

D

E

R

Q

D

I

F

A

M

R

R

Y

Y

S

S

R
|
R

H

Q

I

I

I

L

L

L

K

D

E

D

V

I

G

A

G

L

K

D

G

G

Q

Q

K

Q

K

K

L

L

F

L

D

D

G

S

R

Q

V

V

M

L

I

I

I
|
I

G
|
G

A

L

G
|
G

L

L

G

G

S

T

P

P

I

A

A

A

L

L

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

T

I

L

G

V

I

L

A

A

D
|
D

A

D

D

D

V

D

V

V

D

H

L

L

S

S

N

N

L

L

Q

Q

R
|
R

Q
|
Q

V

I

I

L

H

F

Q

T

T

T

K

E

D

D

V

I

G

D

I

R

A

P

K
|
K

V

S

L

Q

S

V

A

S

K

Q

E

Q

K

R

M

L

Q

T

A

Q

I

L

N

N

P

P

E

D

L

I

K

Q

V

L

N

T

T

A

Y

L

Q

Q

E

Q

W

R

I

L

S

T

A

G

A

E

N

A

I

L

A

K

D

D

I

A

I

V

S

A

E

R

Y

A

D

D

F

V

V

V

I

L

D

D

G

C

T
|
T

D
|
D

N

N

F

M

A

A

A
x
T

K

R

F

Q

L

E

I

I

N

N

D

A

A

A

C

C

V

V

L

A

A

L

G

N

K

T

P

P

Y

L

S

I

H

T

G

A

G

S

I

A

L

V

Q

G

F

F

D

G

G

G

Q

Q

T

L

I

M

T

V

I

L

E

T

-

P

P

P

G

W

K

E

S

Q

P

G

C
|
C

Y

Y

R

R

C
|
C

L

L

F

W

P

-

A

-

P

P

P

D

P

N

K

Q

D

E

A

P

I

E

P

R

T

N

C

C

S

R

T

T

A

A

G

G

V

V

I

V

G

G

V

P

L

V

P

V

G

G

V

V

I

M

G

G

T

T

I

L

Q

Q

A

A

T

L

E

E

A

A

I

I

K

K

Y

L

L

L

L

S

G

G

K

I

G

-

E

E

L

T

L

P

T

A

G

G

R

E

L

L

L

R

T

L

Y

F

N

D

A

G

L

K

R

S

M

S

R

Q

F

W

R

R

E

S

V

L

P

A

V

L

K

R

S

A

A

S

K

G

C
|
C

P

P

I

V

C
|
C

G

G

active site: R11 (= R12), D127 (= D128)
binding adenosine-5'-triphosphate: I34 (= I35), G35 (= G36), G37 (= G38), G38 (= G39), D59 (= D60), R70 (= R71), Q71 (= Q72), K83 (= K84), T126 (= T127), D127 (= D128), T131 (≠ A132)
binding zinc ion: C169 (= C169), C172 (= C172), C240 (= C243), C243 (= C246)

P30138 Sulfur carrier protein ThiS adenylyltransferase; EC 2.7.7.73 from Escherichia coli (strain K12) (see 3 papers)
39% identity, 91% coverage: 2:247/270 of query aligns to 1:244/251 of P30138

query
sites
P30138

L

M

S

N

E

D

E

R

Q

D

I

F

A

M

R

R

Y

Y

S

S

R

R

H

Q

I

I

I

L

L

L

K

D

E

D

V

I

G

A

G

L

K

D

G

G

Q

Q

K

Q

K

K

L

L

F

L

D

D

G

S

R

Q

V

V

M

L

I

I

G

G

A

L

G

G

L

L

G

G

S

T

P

P

I

A

A

A

L

L

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

T

I

L

G

V

I

L

A

A

D

D

A

D

D

D

V

D

V

V

D

H

L

L

S

S

N

N

L

L

Q

Q

R

R

Q

Q

V

I

I

L

H

F

Q

T

T

T

K

E

D

D

V

I

G

D

I

R

A

P

K

K

V

S

L

Q

S

V

A

S

K

Q

E

Q

K

R

M

L

Q

T

A

Q

I

L

N

N

P

P

E

D

L

I

K

Q

V

L

N

T

T

A

Y

L

Q

Q

E

Q

W

R

I

L

S

T

A

G

A

E

N

A

I

L

A

K

D

D

I

A

I

V

S

A

E

R

Y

A

D

D

F

V

V

V

I

L

D

D

G

C

T

T

D

D

N

N

F

M

A

A

A

T

K

R

F

Q

L

E

I

I

N

N

D

A

A

A

C

C

V

V

L

A

A

L

G

N

K

T

P

P

Y

L

S

I

H

T

G

A

G

S

I

A

L

V

Q

G

F

F

D

G

G

G

Q

Q

T

L

I

M

T

V

I

L

E

T

-

P

P

P

G

W

K

E

S

Q

P

G

C
|
C

Y

Y

R

R

C
|
C

L

L

F
x
W

P

-

A

-

P

P

P

D

P

N

K

Q

D

E

A

P

I

E

P

R

T

N

C
|
C

S

R

T

T

A

A

G

G

V

V

I

V

G

G

V

P

L

V

P

V

G

G

V

V

I

M

G

G

T

T

I

L

Q

Q

A

A

T

L

E

E

A

A

I

I

K

K

Y

L

L

L

L

S

G

G

K

I

G

-

E

E

L

T

L

P

T

A

G

G

R

E

L

L

L

R

T

L

Y

F

N

D

A

G

L

K

R

S

M

S

R

Q

F

W

R

R

E

S

V

L

P

A

V

L

K

R

S

A

A

S

K

G

C
|
C

P

P

I

V

C
|
C

G

G

C169 (= C169) binding Zn(2+)
C172 (= C172) binding Zn(2+)
W174 (≠ F174) mutation to A: No adenylation of ThiS.
C184 (= C186) mutation to S: No cross-link formed with ThiS. No effect on ThiS thiocarboxylate formation in vitro. Does not support growth.
C240 (= C243) binding Zn(2+)
C243 (= C246) binding Zn(2+)

6yubA Crystal structure of uba4 from chaetomium thermophilum (see paper)
39% identity, 93% coverage: 2:253/270 of query aligns to 6:276/423 of 6yubA

query
sites
6yubA

L

L

S

S

E

K

E

E

Q

E

I

I

A

E

R

R

Y

Y

S

S

R

R

H

Q

I

M

I

I

L

V

K

P

E

G

V

M

G

G

G

K

K

E

G

G

Q

Q

K

L

K

R

L

L

F

M

D

N

G

A

R

K

V

V

M

L

I

I

G

G

A

A

G

G

L

L

G

G

S

C

P

P

I

A

A

A

L

Q

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

T

I

I

G

G

I

I

A

V

D

D

A

G

D

D

V

S

V

V

D

E

L

T

S

S

N

N

L

L

Q

H

R

R

Q

Q

V

V

I

A

H

H

Q

A

T

T

K

K

D

R

V

V

G

G

I

M

A

L

K

K

V

V

L

D

S

S

A

L

K

I

E

T

K

H

M

L

Q

I

A

E

I

I

N

N

P

P

E

L

L

P

K

V

V

Y

N

V

T

P

Y

Y

Q

R

E

F

W

D

I

L

S

T

A

P

A

Q

N

N

I

A

A

A

D

Q

I

I

S

K

E

P

Y

W

D

D

F

V

V

I

I

L

D

D

G

C

T

T

D

D

N

N

F

P

A

A

A

T

K

R

F

Y

L

L

I

I

N

S

D

D

A

V

C

C

V

V

L

L

A

L

G

G

K

K

P

P

Y

L

S

V

H

S

G

A

I

S

L

V

Q

Q

F

K

D

S

G

G

Q

Q

T

L

I

I

-

V

-

L

-

N

-

C

-

P

-

T

-

P

-

Q

-

G

T

V

I

V

E

N

P

K

G

K

K

A

S

A

P

P

C
|
C

Y

Y

R

R

C
|
C

L

C

F

F

P

K

A

K

P

P

P

-

K

-

D

-

A

-

I

-

P

-

T

-

C

-

S

-

T

-

A

-

G

G

V

I

I

M

G

G

V

P

L

V

P

V

G

G

V

M

I

M

G

G

T

V

I

A

Q

Q

A

A

T

G

E

E

A

A

I

I

K

K

Y

I

L

L

L

V

G

S

K

Q

-

L

-

H

-

M

-

P

-

K

-

E

G

G

E

E

-

E

-

V

-

S

-

P

-

E

-

K

-

N

L

L

L

V

T

Q

G

P

R

T

L

L

T

I

Y

Y

-

T

-

Y

-

D

-

L

-

N

-

S

-

A

-

I

-

G

-

P

-

Y

-

S

-

F

N

R

A

A

L

L

R

K

M

M

R

G

F

G

R

R

E

K

V

-

P

-

V

-

K

-

S

-

A

K

K

D

C
|
C

P

F

I

A

C
|
C

G

G

E

E

N

N

P

S

T

T

I

L

T

T

binding zinc ion: C183 (= C169), C186 (= C172), C266 (= C243), C269 (= C246)

1zud3 Structure of this-thif protein complex (see paper)
39% identity, 91% coverage: 2:247/270 of query aligns to 1:239/240 of 1zud3

query
sites
1zud3

L

M

S

N

E

D

E

R

Q

D

I

F

A

M

R

R

Y

Y

S

S

R
|
R

H

Q

I

I

I
x
L

L

L

K
x
D

E

D

V

I

G

A

G

L

K

D

G

G

Q

Q

K

Q

K

K

L

L

F

L

D

D

G

S

R

Q

V

V

M

L

I

I

G

G

A

L

G

G

L

L

G

G

S

T

P

P

I

A

A

A

L

L

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

T

I

L

G

V

I

L

A

A

D

D

A

D

D

D

V

D

V

V

D

H

L

L

S

S

N

N

L

L

Q

Q

R

R

Q

Q

V

I

I

L

H

F

Q

T

T

T

K

E

D

D

V

I

G

D

I

R

A

P

K

K

V

S

L

Q

S

V

A

S

K

Q

E

Q

K

R

M

L

Q

T

A

Q

I

L

N

N

P

P

E

D

L

I

K

Q

V

L

N

T

T

A

Y

L

Q

Q

E

Q

W

R

I

L

S

T

A

G

A

E

N

A

I

L

A

K

D

D

I

A

I

V

S

A

E

R

Y

A

D

D

F

V

V

V

I

L

D

D

G

C

T

T

D
|
D

N

N

F

M

A

A

A

T

K

R

F

Q

L

E

I

I

N

N

D

A

A

A

C

C

V

V

L

A

A

L

G

N

K

T

P

P

Y

L

S

I

H

T

G

A

G

S

I

A

L

V

Q

G

F

F

D

G

G

G

Q

Q

T

L

I

M

T

V

I

L

E

T

-

P

P

P

G

W

K

E

S

Q

P

G

C
|
C

Y

Y

R

R

C

C

L

L

F

W

P

-

A

-

P

-

P

P

K

D

D

N

A

Q

I

E

P

P

T

-

C

-

S

-

T

T

A

A

G

G

V

V

I

V

G

G

V

P

L

V

P

V

G

G

V

V

I

M

G

G

T

T

I

L

Q

Q

A

A

T

L

E

E

A

A

I

I

K

K

Y

L

L

L

L

S

G

G

K

I

G

-

E

E

L

T

L

P

T

A

G

G

R

E

L

L

L

R

T

L

Y

F

N

D

A

G

L

K

R

S

M

S

R

Q

F

W

R

R

E

S

V

L

P

A

V

L

K

R

S

A

A

S

K

G

C
|
C

P

P

I

V

C
|
C

G

G

active site: R11 (= R12), D127 (= D128)
binding calcium ion: L14 (≠ I15), D16 (≠ K17)
binding zinc ion: C169 (= C169), C235 (= C243), C238 (= C246)

6yubB Crystal structure of uba4 from chaetomium thermophilum (see paper)
39% identity, 93% coverage: 2:253/270 of query aligns to 7:275/289 of 6yubB

query
sites
6yubB

L

L

S

S

E

K

E

E

Q

E

I

I

A

E

R

R

Y

Y

S

S

R

R

H

Q

I

M

I

I

L

V

K

P

E

G

V

M

G

G

G

K

K

E

G

G

Q

Q

K

L

K

R

L

L

F

M

D

N

G

A

R

K

V

V

M

L

I

I

G

G

A

A

G

G

L

L

G

G

S

C

P

P

I

A

A

A

L

Q

Y

Y

L

L

A

A

A

G

A

A

G

G

V

V

G

G

T

T

I

I

G

G

I

I

A

V

D

D

A

G

D

D

V

S

V

V

D

E

L

T

S

S

N

N

L

L

Q

H

R

R

Q

Q

V

V

I

A

H

H

Q

A

T

T

K

K

D

R

V

V

G

G

I

M

A

L

K

K

V

V

L

D

S

S

A

L

K

I

E

T

K

H

M

L

Q

I

A

E

I

I

N

N

P

P

E

L

L

P

K

V

V

Y

N

V

T

P

Y

Y

Q

R

E

F

W

D

I

L

S

T

A

P

A

Q

N

N

I

A

A

A

D

Q

I

I

S

K

E

P

Y

W

D

D

F

V

V

I

I

L

D

D

G

C

T

T

D

D

N

N

F

P

A

A

A

T

K

R

F

Y

L

L

I

I

N

S

D

D

A

V

C

C

V

V

L

L

A

L

G

G

K

K

P

P

Y

L

S

V

H

S

G

A

I

S

L

V

Q

Q

F

K

D

S

G

G

Q

Q

T

L

I

I

-

V

-

L

-

N

-

C

-

P

-

T

-

P

-

Q

-

G

T

V

I

V

E

N

P

K

G

K

K

A

S

A

P

P

C
|
C

Y

Y

R

R

C
|
C

L

C

F

F

P

-

A

-

P

-

K

-

D

-

A

-

I

-

P

-

T

-

C

-

S

-

T

-

A

K

G

G

V

I

I

M

G

G

V

P

L

V

P

V

G

G

V

M

I

M

G

G

T

V

I

A

Q

Q

A

A

T

G

E

E

A

A

I

I

K

K

Y

I

L

L

L

V

G

S

K

Q

-

L

-

H

-

M

-

P

-

K

-

E

G

G

E

E

-

E

-

V

-

S

-

P

-

E

-

K

-

N

L

L

L

V

T

Q

G

P

R

T

L

L

T

I

Y

Y

N

T

-

Y

-

D

-

L

-

N

-

S

-

A

-

I

-

G

-

P

-

Y

-

S

-

F

-

R

A

A

L

L

R

K

M

M

R

G

F

G

R

R

E

K

V

-

P

-

V

-

K

-

S

-

A

K

K

D

C
|
C

P

F

I

A

C

C

G

G

E

E

N

N

P

S

T

T

I

L

T

T

binding zinc ion: C184 (= C169), C187 (= C172), C265 (= C243)

1jwaB Structure of the atp-bound moeb-moad protein complex (see paper)
38% identity, 88% coverage: 2:239/270 of query aligns to 3:217/217 of 1jwaB

query
sites
1jwaB

L

L

S

S

E

D

E

Q

Q

E

I

M

A

L

R

R

Y

Y

S

N

R
|
R

H

Q

I

I

L

L

K

R

E

G

V

F

G

D

G

F

K

D

G

G

Q

Q

K

E

K

A

L

L

F

K

D

D

G

S

R

R

V

V

M

L

I

I

I

V

G

G

A

L

G
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G

L

L

G

G

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C

P

A

I

A

A

S

L

Q

Y

Y

L

L

A

A

A

S

A

A

G

G

V

V

G

G

T

N

I

L

G

T

I

L

A

L

D
|
D

A
x
F

D

D

V

T

V

V

D

S

L

L

S

S

N

N

L

L

Q

Q

R
|
R

Q

Q

V

T

I

L

H

H

Q

S

T

D

K

A

D

T

V

V

G

G

I

Q

A

P

K
|
K

V

V

L

E

S

S

A

A

K

R

E

D

K

A

M

L

Q

T

A

R

I

I

N

N

P

P

E

H

L

I

K

A

V

I

N

T

T

P

Y

V

Q

N

E

A

W
x
L

I

L

S

D

A

D

A

A

N

E

I

L

A

A

D

A

I

L

I

I

S

A

E

E

Y

H

D

D

F

L

V

V

I

L

D

D

G

C

T

T

D
|
D

N
|
N

F

V

A

A

A
x
V

K

R

F

N

L

Q

I

L

N

N

D

A

A

G

C

C

V

F

L

A

A

A

G

K

K

V

P

P

Y

L

S

V

H

S

G

G

G

A

I

A

L

I

Q

R

F

M

D

E

G

G

Q

Q

T

-

I

I

T

T

I

V

E

-

P

-

G

-

K

-

S

-

P

-

C

-

Y

-

R

-

C

-

L

-

F

-

P

-

A

-

P

-

K

-

D

-

A

-

I

-

P

-

T

F

C

T

S

Y

T

E

A

A

G

G

V

V

I

M

G

A

V

P

L

L

P

I

G

G

V

V

I

I

G

G

T

S

I

L

Q

Q

A

A

T

M

E

E

A

A

I

I

K

K

Y

M

L

L

L

A

G

G

K

Y

G

G

E

K

L

P

L

A

T

S

G

G

R

K

L

I

L

V

T

M

Y

Y

N

D

A

A

L

M

R

T

M

C

R

Q

F

F

R

R

E

E

V

M

P

K

V

L

K

M

K

R

active site: R13 (= R12), D129 (= D128)
binding adenosine-5'-triphosphate: G39 (= G38), G40 (= G39), D61 (= D60), F62 (≠ A61), R72 (= R71), K85 (= K84), L108 (≠ W107), D129 (= D128), N130 (= N129), V133 (≠ A132)

O42939 Ubiquitin-activating enzyme E1-like; Pmt3-activating enzyme subunit 2 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
35% identity, 59% coverage: 30:187/270 of query aligns to 26:182/628 of O42939

query
sites
O42939

G

A

R

K

V

V

M

L

I

L

I

V

G

G

A

A

G

G

L

I

G

G

S

C

P

E

I

L

A

L

L

K

Y

N

L

L

A

L

A

M

A

S

G

G

V

V

G

K

T

E

I

V

G

H

I

I

A

I

D

D

A

L

D

D

V

T

V

I

D

D

L

L

S

S

N

N

L

L

Q

N

R

R

Q

Q

V

F

I

L

H

F

Q

R

T

K

K

K

D

H

V

V

G

K

I

Q

A

P

K

K

V

A

L

I

S

V

A

A

K

A

E

K

K

T

M

A

Q

S

A

S

I

F

N

N

P

P

E

N

L

V

K

K

V

L

N

E

T

A

Y

Y

Q

H

E

A

W

N

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I

S

K

A

E

A

D

-

R

-

F

N

N

I

V

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-

I

W

I

F

S

R

E

Q

Y

F

D

D

F

L

V

V

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N

G

A

T

L

D

D

N

N

F

L

A

D

A

A

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F

R

L

H

I

V

N

N

D

K

A

Q

C

C

V

L

L

L

A

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K

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P

Y

L

S

I

H

E

G

S

G

G

I

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L

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G

F

F

D

L

G

G

Q

Q

T

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I

Q

T

V

I

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I

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H

G

G

K

K

S

T

P

E

C

C

Y

Y

R

D

C

C

L

-

F

N

P

P

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K

P

E

P

P

K

K

D

-

A

T

I

Y

P

P

T

V

C

C

S

T

Sites not aligning to the query:

559 modified: Phosphoserine
563 modified: Phosphoserine

6xoiB Structure of sumo1-ml00752641 adduct bound to sae (see paper)
34% identity, 54% coverage: 30:175/270 of query aligns to 11:157/403 of 6xoiB

query
sites
6xoiB

G

G

R

R

V

V

M

L

I

V

G

G

A

A

G

G

G
|
G

L

I

G

G

S

C

P

E

I

L

A

L

L

K

Y

N

L

L

A

V

A

L

A

T

G

G

V

F

G

S

T

H

I

I

G

D

I

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|
D

A
x
L

D

D

V

T

V

I

D

D

L

V

S

S

N

N

L

L

Q

N

R

R

Q

Q

V

F

I

L

H

F

Q

Q

T

K

K

K

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H

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V

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G

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K
|
K

V

A

L

Q

S

V

A

A

K

K

E

E

K

S

M

V

Q

L

A

Q

I

F

N

Y

P

P

E

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L

A

K

N

V

I

N

V

T

A

Y

Y

Q

H

E

D

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x
S

I
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I

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M

A

N

A

P

N

D

I

Y

-

N

A

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I

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S

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E

Q

Y

F

D

I

F

L

V

V

I

M

D

N

G
x
A

T
x
L

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|
D

N
|
N

F

R

A

A

K

R

F

N

L

H

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N

N

D

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A

M

C

C

V

L

L

A

A

A

G

D

K

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P

Y

L

S

I

H

E

G

S

G

G

I

T

L

A

Q

G

F

Y

D

L

G

G

Q

Q

T

V

I

T

T

T

I

I

E

K

P

K

G

G

K

V

S

T

P

E

C
|
C

Y

Y

R

E

C
|
C

L

H

F

F

P

P

active site: D110 (= D128)
binding [(1R,2R,3S,4R)-4-{[5-(1-benzyl-1H-pyrazole-3-carbonyl)pyrimidin-4-yl]amino}-2,3-dihydroxycyclopentyl]methyl sulfamate: G20 (= G39), D41 (= D60), L42 (≠ A61), K65 (= K84), S88 (≠ W107), I89 (= I108), A108 (≠ G126), L109 (≠ T127), D110 (= D128), N111 (= N129)
binding zinc ion: C151 (= C169), C154 (= C172)

Sites not aligning to the query:

active site: 159, 160, 162
binding zinc ion: 353, 356

6xohB Structure of sumo1-ml00789344 adduct bound to sae (see paper)
33% identity, 59% coverage: 30:187/270 of query aligns to 13:166/490 of 6xohB

query
sites
6xohB

G

G

R

R

V

V

M

L

I

V

G

G

A

A

G

G

L

I

G

G

S

C

P

E

I

L

A

L

L

K

Y

N

L

L

A

V

A

L

A

T

G

G

V

F

G

S

T

H

I

I

G

D

I

L

A

I

D
|
D

A
x
L

D

D

V

T

V

I

D

D

L

V

S

S

N

N

L

L

Q

N

R

R

Q

Q

V

F

I

L

H

F

Q

Q

T

K

K

K

D

H

V

V

G

G

I

R

A

S

K
|
K

V

A

L

Q

S

V

A

A

K

K

E

E

K

S

M

V

Q

L

A

Q

I

F

N

Y

P

P

E

K

L

A

K

N

V

I

N

V

T

A

Y

Y

Q

H

E

D

W
x
S

I
|
I

S
x
M

A

N

A

P

N

D

I

Y

-

N

A

V

D

E

I

F

S

R

E

Q

Y

F

D

I

F

L

V

V

I

M

D

N

G

A

T
x
L

D
|
D

N
|
N

F

R

A

A

K

R

F

N

L

H

I

V

N

N

D

R

A

M

C

C

V

L

L

A

A

A

G

D

K

V

P

P

Y

L

S

I

H

E

G

S

G

G

I

T

L

A

Q

G

F

Y

D

L

G

G

Q

Q

T

V

I

T

T

T

I

I

E

K

P

K

G

G

K

V

S

T

P

E

C
|
C

Y

Y

R

E

C
|
C

L

-

F

-

P

-

A

-

P

-

P

H

P

P

K

K

D

R

A

T

I

F

P

P

T

G

C
|
C

S
x
T

active site: D112 (= D128), C165 (= C186), T166 (≠ S187)
binding {(1R,2S,4R)-4-[(5-{4-[(1R)-3,4-dihydro-1H-2-benzopyran-1-yl]thiophene-2-carbonyl}pyrimidin-4-yl)amino]-2-hydroxycyclopentyl}methyl sulfamate: D43 (= D60), L44 (≠ A61), K67 (= K84), S90 (≠ W107), I91 (= I108), M92 (≠ S109), L111 (≠ T127), D112 (= D128), N113 (= N129)
binding zinc ion: C153 (= C169), C156 (= C172)

Sites not aligning to the query:

active site: 168
binding zinc ion: 391, 394

6xogB Structure of sumo1-ml786519 adduct bound to sae (see paper)
33% identity, 59% coverage: 30:187/270 of query aligns to 11:164/500 of 6xogB

query
sites
6xogB

G

G

R

R

V

V

M

L

I

V

G

G

A

A

G

G

L

I

G

G

S

C

P

E

I

L

A

L

L

K

Y

N

L

L

A

V

A

L

A

T

G

G

V

F

G

S

T

H

I

I

G

D

I

L

A

I

D
|
D

A
x
L

D

D

V

T

V

I

D

D

L

V

S

S

N

N

L

L

Q

N

R

R

Q

Q

V

F

I

L

H

F

Q

Q

T

K

K

K

D

H

V

V

G

G

I

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A

S

K
|
K

V

A

L

Q

S

V

A

A

K

K

E

E

K

S

M

V

Q

L

A

Q

I

F

N

Y

P

P

E

K

L

A

K

N

V

I

N

V

T

A

Y

Y

Q

H

E

D

W
x
S

I
|
I

S
x
M

A

N

A

P

N

D

I

Y

-

N

A

V

D

E

I

F

S

R

E

Q

Y

F

D

I

F

L

V

V

I

M

D

N

G
x
A

T

L

D
|
D

N
|
N

F

R

A

A

K

R