SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_011951447.1 NCBI__GCF_000016765.1:WP_011951447.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
28% identity, 91% coverage: 8:93/95 of query aligns to 7:92/564 of 3al0C

query
sites
3al0C
V
 
V
R
 
L
K
 
H
I
 
L
A
 
E
S
 
N
L
 
L
A
 
A
R
 
R
I
 
L
A
 
E
V
 
L
T
 
S
D
 
E
G
 
D
D
 
Q
V
 
R
E
 
E
A
 
S
M
 
L
V
 
M
P
 
K
E
 
D
L
 
F
N
 
Q
N
 
E
I
 
I
L
 
L
G
 
D
W
 
Y
I
 
V
E
 
E
Q
 
L
L
 
L
G
 
N
E
 
E
V
 
V
D
 
D
T
 
V
D
 
E
G
 
G
V
 
V
A
 
E
P
 
P
L
 
M
A
 
Y
A
 
T
V
 
P
I
 
V
P
 
E
N
 
D
H
 
S
Q
 
A
R
 
K
L
 
L
R
 
R
D
 
K
D
 
G
V
 
D
V
 
P
T
 
R
D
 
F
G
 
F
N
 
E
I
 
M
R
 
R
D
 
D
K
 
L
V
 
I
L
 
K
A
 
K
N
 
N
A
 
F
P
 
P
Q
 
E
A
 
E
E
 
K
H
 
D
G
 
G
F
 
H
F
 
I
A
 
K
V
 
V
P
 
P
K
 
G
V
 
I

Sites not aligning to the query:

Query Sequence

>WP_011951447.1 NCBI__GCF_000016765.1:WP_011951447.1
MSVDAATVRKIASLARIAVTDGDVEAMVPELNNILGWIEQLGEVDTDGVAPLAAVIPNHQ
RLRDDVVTDGNIRDKVLANAPQAEHGFFAVPKVIE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory