Comparing WP_012043373.1 NCBI__GCF_000015165.1:WP_012043373.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 42% coverage: 341:586/589 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 42% coverage: 341:586/589 of query aligns to 4:253/253 of 1g9xB
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
30% identity, 40% coverage: 341:574/589 of query aligns to 2:223/241 of 4u00A
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
29% identity, 42% coverage: 339:586/589 of query aligns to 4:238/240 of 1ji0A
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 42% coverage: 341:588/589 of query aligns to 3:241/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 42% coverage: 341:588/589 of query aligns to 3:241/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 42% coverage: 341:588/589 of query aligns to 3:241/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 42% coverage: 341:588/589 of query aligns to 3:241/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
29% identity, 41% coverage: 344:582/589 of query aligns to 4:234/240 of 4ymuJ
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
28% identity, 41% coverage: 339:581/589 of query aligns to 2:235/501 of P04983
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
33% identity, 40% coverage: 341:575/589 of query aligns to 2:227/253 of 6z5uK
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
27% identity, 42% coverage: 341:586/589 of query aligns to 2:235/240 of 6mjpA
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
33% identity, 40% coverage: 341:575/589 of query aligns to 4:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
33% identity, 40% coverage: 341:575/589 of query aligns to 4:229/263 of 7d08B
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
31% identity, 40% coverage: 351:586/589 of query aligns to 12:235/235 of 6mhzA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 37% coverage: 356:570/589 of query aligns to 20:223/343 of P30750
Sites not aligning to the query:
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
31% identity, 40% coverage: 339:575/589 of query aligns to 2:224/285 of 4yerA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
31% identity, 40% coverage: 351:586/589 of query aligns to 12:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
31% identity, 40% coverage: 351:586/589 of query aligns to 12:235/238 of 6s8gA
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
33% identity, 37% coverage: 356:570/589 of query aligns to 21:224/344 of 6cvlD
Sites not aligning to the query:
>WP_012043373.1 NCBI__GCF_000015165.1:WP_012043373.1
MTRLHVQLAAMVAMLCLAAAPFLLPPFTITLMNYIGVYSLVAIGLALLTGVGGIVSFGQA
AFVGIAAYATAWVSALNGQSPWVGLLLALTLTCSIATLLGLATLRLQGHFLSLSTVAWGL
AIGFLFGNVEGLGRFNGIASIPPISFGSYALVSSAQVYFLIWGIVAAVLWIGYNLLDSRL
GRAMRALRGGNTLVESLGISAFRIKLLIFVIAAFLAALSGWLYAHMSRFISPGPFDAGMG
IEYLMMSMVGGAGSLLGGVVGAAIVTLLKNSVQDYLPLIAKGASGQLEIVAFSALFILFL
QWARQGIVPFVGRYLPKLRRDRPQPAPALPRRAQPAPGELLLKVDGAERRFGGLVAVNNV
SFDVRSGEILAVIGPNGAGKSTMFNCLTGALRVNKGDIVFAGRSITREAQSRIAKAGIAR
TFQHVKLRPRMSLLENVMLGTYARTRTGLLASALRLNRREEASAQFEALRQLERVGLGDK
PFDIAGNLPLGNQRILEIARALAADPALLVLDEPAAGLRRQEKLRLAELLRSLRNDHLTI
LIVEHDMEFVMSLVDRIVVLDFGSKLCEGDPAAIRNDERVQEAYLGGVA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory