SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012048846.1 NCBI__GCF_000016765.1:WP_012048846.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gbxD Crystal structure of biphenyl 2,3-dioxygenase from sphingomonas yanoikuyae b1 bound to biphenyl (see paper)
28% identity, 84% coverage: 14:157/171 of query aligns to 9:156/170 of 2gbxD

query
sites
2gbxD
H
 
H
A
 
Y
D
 
D
I
 
I
R
 
E
A
 
A
F
 
H
L
 
Y
Y
 
R
R
 
A
E
 
E
A
 
V
R
 
R
L
 
M
L
 
F
D
 
Q
D
 
T
R
 
G
D
 
Q
W
 
Y
D
 
R
A
 
E
W
 
W
L
 
L
E
 
Q
-
 
G
C
 
M
Y
 
V
A
 
A
P
 
E
D
 
D
V
 
I
E
x
H
Y
 
Y
W
 
W
M
 
M
P
 
P
A
 
I
W
 
Y
T
 
-
D
 
-
D
 
E
D
 
Q
D
 
R
L
 
L
T
 
T
R
 
R
-
 
D
-
 
R
-
 
R
-
 
P
D
 
D
P
 
P
Q
 
T
A
 
P
E
 
D
I
 
D
S
 
A
L
 
A
I
 
I
Y
 
Y
Y
 
N
A
 
D
N
 
D
R
 
F
Q
 
G
G
 
E
L
 
L
E
 
K
D
 
Q
R
 
R
V
 
V
Y
 
E
R
 
R
L
 
L
K
 
Y
T
 
S
G
 
G
R
 
Q
S
 
V
S
 
W
A
 
M
S
 
E
T
 
D
P
 
P
E
 
P
A
 
S
R
 
K
T
 
I
S
 
R
H
 
Y
A
 
F
I
 
V
N
 
S
N
 
N
V
 
V
E
 
E
I
 
A
L
 
F
A
 
E
E
 
A
R
 
G
D
 
N
G
 
G
L
 
E
V
 
L
E
 
D
L
 
V
R
 
L
Y
 
S
N
 
N
W
 
I
H
 
L
T
 
V
L
 
Y
S
 
R
H
 
N
R
 
R
L
 
R
Q
 
Q
Q
 
T
-
 
E
-
 
V
T
 
T
S
 
V
Q
 
H
F
 
T
F
 
L
G
 
G
T
 
R
A
 
E
F
 
-
C
 
D
T
 
K
L
 
L
D
 
R
T
 
R
R
 
D
G
 
G
D
 
N
A
 
G
I
 
F
R
 
K
I
 
V
V
 
F
R
|
R
K
 
R
K
 
K
I
 
L
V
 
I
L
 
L

Query Sequence

>WP_012048846.1 NCBI__GCF_000016765.1:WP_012048846.1
MTALLEPVRATLSHADIRAFLYREARLLDDRDWDAWLECYAPDVEYWMPAWTDDDDLTRD
PQAEISLIYYANRQGLEDRVYRLKTGRSSASTPEARTSHAINNVEILAERDGLVELRYNW
HTLSHRLQQTSQFFGTAFCTLDTRGDAIRIVRKKIVLKNDYIHQVVDIYHL

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory