SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012067303.1 NCBI__GCF_000017145.1:WP_012067303.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
33% identity, 78% coverage: 8:94/111 of query aligns to 3:93/104 of 2gtvX

query
sites
2gtvX
E
 
E
E
 
K
L
 
L
A
 
A
S
 
E
Y
 
I
R
|
R
Q
 
K
S
 
K
I
 
I
D
 
D
N
 
E
I
 
I
D
 
D
A
 
N
A
 
K
L
 
I
V
 
L
H
 
K
-
 
A
-
 
R
-
 
W
-
 
P
-
 
W
-
 
A
-
 
E
-
 
K
M
 
L
L
 
I
A
 
A
E
 
E
R
|
R
F
 
N
R
 
S
C
 
L
T
 
A
K
 
K
A
 
D
V
|
V
G
 
A
V
 
E
L
 
I
K
|
K
A
 
N
K
 
Q
H
 
L
Q
 
G
L
 
I
P
 
P
P
 
I
A
 
N
D
|
D
P
 
P
A
 
E
R
|
R
E
|
E
E
 
K
Y
 
Y
Q
 
I
I
 
Y
E
 
D
R
 
R
L
 
I
R
 
R
H
 
K
L
 
L
A
 
C
K
 
K
D
 
E
A
 
H
N
 
N
L
 
V
D
 
D
P
 
E
D
 
N
F
 
I
A
 
G
E
 
I
K
 
K
F
 
-
L
 
-
N
 
-
F
 
-
I
 
I
I
 
F
K
 
Q
E
 
R
V
 
L
I
 
I
R
 
E
H
 
H
H
x
N
E
 
K
A
 
A
I
 
L

Sites not aligning to the query:

Query Sequence

>WP_012067303.1 NCBI__GCF_000017145.1:WP_012067303.1
MLDPGIKEELASYRQSIDNIDAALVHMLAERFRCTKAVGVLKAKHQLPPADPAREEYQIE
RLRHLAKDANLDPDFAEKFLNFIIKEVIRHHEAIAADCSHSAGNAGNTHSA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory