Comparing WP_012101430.1 NCBI__GCF_000016505.1:WP_012101430.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
39% identity, 83% coverage: 2:267/322 of query aligns to 345:610/611 of 8j5qD
Sites not aligning to the query:
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
39% identity, 82% coverage: 2:264/322 of query aligns to 345:607/608 of 8j5tD
Sites not aligning to the query:
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
39% identity, 82% coverage: 2:264/322 of query aligns to 345:607/608 of 8j5sD
Sites not aligning to the query:
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
34% identity, 98% coverage: 5:321/322 of query aligns to 4:318/326 of Q8RDH4
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
34% identity, 98% coverage: 5:321/322 of query aligns to 3:307/310 of 4fwiB
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
33% identity, 94% coverage: 18:321/322 of query aligns to 8:323/330 of P0AAH4
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 76% coverage: 18:261/322 of query aligns to 6:251/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
34% identity, 76% coverage: 18:261/322 of query aligns to 7:252/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
34% identity, 76% coverage: 18:261/322 of query aligns to 7:252/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
34% identity, 76% coverage: 18:261/322 of query aligns to 7:252/344 of 3tuiC
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
36% identity, 71% coverage: 35:262/322 of query aligns to 44:269/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
36% identity, 71% coverage: 35:262/322 of query aligns to 44:269/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
37% identity, 69% coverage: 32:253/322 of query aligns to 41:260/260 of 7ahdC
Sites not aligning to the query:
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
33% identity, 74% coverage: 25:263/322 of query aligns to 7:251/253 of 7z15I
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
33% identity, 73% coverage: 25:259/322 of query aligns to 7:247/250 of 7z18I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
33% identity, 73% coverage: 25:259/322 of query aligns to 7:247/250 of 7z16I
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 32:273/322 of query aligns to 20:258/353 of 1oxvD
Sites not aligning to the query:
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 32:273/322 of query aligns to 20:258/353 of 1oxvA
Sites not aligning to the query:
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 75% coverage: 32:273/322 of query aligns to 20:258/353 of 1oxuA
Sites not aligning to the query:
Q97UY8 Glucose import ATP-binding protein GlcV; EC 7.5.2.- from Saccharolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (Sulfolobus solfataricus) (see paper)
31% identity, 75% coverage: 32:273/322 of query aligns to 20:258/353 of Q97UY8
>WP_012101430.1 NCBI__GCF_000016505.1:WP_012101430.1
MAEQIIKAEHLKKYYEVNGTGFIKNDTEYLHAVDDVSFEINKGEIFGIVGESGCGKSTLG
RCILRLIDSIGGNIYFKGKDITHISQRDLKSQRRYMQMVFQNPYSSFNPKMTIGKSLHEV
GKVYKISKDDSTRRINQLLEYIRLSEDMINHYPNELSGGQLQRLAIARALFFQPDFIIAD
EPVSALDVSVQAQILSLILDLRDKLGLTMIFISHDLTVVEYICDVIAVMYLGTIVEKSPK
KDLFKNIYHPYTEALISDVPKSDPKQQTSRIVLKGDLPNAIDMPKGCRFSPRCPKFKKGK
CDAEVPALREISEGHFAACHFV
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory