Comparing WP_012115874.1 NCBI__GCF_000017645.1:WP_012115874.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 91% coverage: 14:293/308 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 91% coverage: 14:293/308 of query aligns to 4:253/254 of 1g6hA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
28% identity, 87% coverage: 14:282/308 of query aligns to 4:224/285 of 4yerA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
29% identity, 89% coverage: 13:286/308 of query aligns to 1:228/241 of 4u00A
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
26% identity, 91% coverage: 14:294/308 of query aligns to 6:239/240 of 1ji0A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
24% identity, 87% coverage: 14:281/308 of query aligns to 1:223/240 of 4ymuJ
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
29% identity, 84% coverage: 29:286/308 of query aligns to 20:233/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
29% identity, 84% coverage: 29:286/308 of query aligns to 21:234/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
29% identity, 84% coverage: 29:286/308 of query aligns to 21:234/344 of 3tuiC
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
29% identity, 84% coverage: 29:286/308 of query aligns to 21:234/344 of 6cvlD
Sites not aligning to the query:
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
27% identity, 87% coverage: 14:282/308 of query aligns to 4:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
27% identity, 87% coverage: 14:282/308 of query aligns to 4:229/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
27% identity, 87% coverage: 14:282/308 of query aligns to 2:227/253 of 6z5uK
3d31A Modbc from methanosarcina acetivorans (see paper)
26% identity, 92% coverage: 14:295/308 of query aligns to 1:231/348 of 3d31A
Sites not aligning to the query:
8i6rB Cryo-em structure of pseudomonas aeruginosa ftse(e163q)x/envc complex with atp in peptidisc (see paper)
27% identity, 81% coverage: 26:275/308 of query aligns to 14:218/222 of 8i6rB
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
28% identity, 88% coverage: 15:286/308 of query aligns to 7:245/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
28% identity, 88% coverage: 15:286/308 of query aligns to 3:241/258 of 1b0uA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
25% identity, 94% coverage: 4:293/308 of query aligns to 7:249/378 of P69874
Sites not aligning to the query:
8wm7C Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
26% identity, 87% coverage: 14:281/308 of query aligns to 2:224/658 of 8wm7C
7e7oA Cryo-em structure of human abca4 in nrpe-bound state (see paper)
26% identity, 81% coverage: 28:278/308 of query aligns to 823:1023/2003 of 7e7oA
Sites not aligning to the query:
>WP_012115874.1 NCBI__GCF_000017645.1:WP_012115874.1
MANLDPVAGARAPILAVDHLSMRFGGLIAVNDVSFVAARGEVTAVIGPNGAGKTTVFNCI
TGFYKPSAGRLALFHGGAATPGELDAVTASGLSWGRTGAGALYLLERLPDHKVASWARVA
RTFQNIRLFSGMTVLENLLVAQHMSLTSAGLLNPAAILNLPSWKRQQKGAMDKALYWLHQ
IGLMERADDPAGDLPYGDQRRLEIARAMCTNPVLLCLDEPAAGLNPRESAALNELLLSIR
RDHDTSILLIEHDMSVVMEISDHVVVLEYGCKIADGTPQEVRTDPKVIASYLGVEEEEAA
VVEAQVGA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory