Comparing WP_012332016.1 NCBI__GCF_000019365.1:WP_012332016.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
32% identity, 88% coverage: 12:492/546 of query aligns to 9:480/501 of P04983
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
32% identity, 49% coverage: 12:280/546 of query aligns to 9:273/285 of 4yerA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
31% identity, 40% coverage: 13:230/546 of query aligns to 7:227/240 of 4ymuJ
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
33% identity, 36% coverage: 24:218/546 of query aligns to 22:220/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 37% coverage: 19:218/546 of query aligns to 18:221/344 of 6cvlD
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 36% coverage: 24:218/546 of query aligns to 23:221/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 36% coverage: 24:218/546 of query aligns to 23:221/344 of 3tuiC
Sites not aligning to the query:
P02915 Histidine/lysine/arginine/ornithine transport ATP-binding protein HisP; EC 7.4.2.1 from Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (see paper)
31% identity, 39% coverage: 15:225/546 of query aligns to 14:239/258 of P02915
1b0uA Atp-binding subunit of the histidine permease from salmonella typhimurium (see paper)
31% identity, 39% coverage: 15:225/546 of query aligns to 10:235/258 of 1b0uA
2awnB Crystal structure of the adp-mg-bound e. Coli malk (crystallized with atp-mg) (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 7:217/374 of 2awnB
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 40% coverage: 7:223/546 of query aligns to 3:222/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 40% coverage: 7:223/546 of query aligns to 3:222/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 40% coverage: 7:223/546 of query aligns to 3:222/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 40% coverage: 7:223/546 of query aligns to 3:222/242 of 2oljA
3puyA Crystal structure of an outward-facing mbp-maltose transporter complex bound to amp-pnp after crystal soaking of the pretranslocation state (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 7:217/371 of 3puyA
3puxA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-bef3 (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 7:217/371 of 3puxA
3puwA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-alf4 (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 7:217/371 of 3puwA
3puvA Crystal structure of an outward-facing mbp-maltose transporter complex bound to adp-vo4 (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 7:217/371 of 3puvA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
28% identity, 43% coverage: 7:239/546 of query aligns to 2:237/240 of 6mjpA
1q12A Crystal structure of the atp-bound e. Coli malk (see paper)
33% identity, 39% coverage: 12:223/546 of query aligns to 5:215/367 of 1q12A
>WP_012332016.1 NCBI__GCF_000019365.1:WP_012332016.1
MAEATPLFGAYGIVKRFGAFAANDGVDLEIRAGEIHALLGENGAGKSTLMKMLYGLLEPT
SGALTHRGERIRIPSPEAARALGIGMVFQHFSLCENLTVIENIALVMPRRLARAALRGRL
AAVTAAYGLPLDPDRPVWSLSAGERQRIEIVRCLLQDPVLVILDEPTSVLTPGEAEGLFR
VLERLRDEGRAILYISHKLDEVRRLCSRATILRGGKVVGACDPRRESARSLAALMVGEQV
AEVRPPARPPGARARLVVDGLSLPAPGLHGTPLRDVSLRVREGEVVGIAGIAGNGQAELF
AALSGETLAERADSVQVDGAPVGRLGITARRRRGAAFVPEERNGHGAAPDLGLTDNAILS
RHADAGLARAGFLRLGAARALMQAIVAAFDVRKAGPDPAARTLSGGNLQKFLVGREILAE
PGILVINQPTWGVDAAAAARIRQALLDLAGRGAAVLVISQDLDELFEVAGRIAVLHEGRL
SPARPAGDLTREAIGLMMGGAAGPEVQAHSGDAREAEARTGGAHAGGVHAGGAHAGGARQ
EDVRAP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory