Comparing WP_012332178.1 NCBI__GCF_000019365.1:WP_012332178.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
36% identity, 93% coverage: 5:254/269 of query aligns to 5:254/254 of 1g6hA
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
33% identity, 93% coverage: 5:255/269 of query aligns to 3:237/240 of 6mjpA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
35% identity, 93% coverage: 5:253/269 of query aligns to 5:253/253 of 1g9xB
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 94% coverage: 3:255/269 of query aligns to 1:237/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 94% coverage: 3:255/269 of query aligns to 1:237/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 94% coverage: 2:255/269 of query aligns to 1:238/241 of 6mbnA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
30% identity, 88% coverage: 1:238/269 of query aligns to 1:220/285 of 4yerA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 93% coverage: 3:253/269 of query aligns to 1:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 93% coverage: 3:252/269 of query aligns to 1:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 93% coverage: 3:252/269 of query aligns to 1:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 93% coverage: 3:251/269 of query aligns to 1:233/233 of 6b8bA
3d31A Modbc from methanosarcina acetivorans (see paper)
32% identity, 90% coverage: 5:245/269 of query aligns to 2:219/348 of 3d31A
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 91% coverage: 5:250/269 of query aligns to 4:234/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 91% coverage: 5:250/269 of query aligns to 4:234/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 91% coverage: 5:250/269 of query aligns to 4:234/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 91% coverage: 5:250/269 of query aligns to 4:234/242 of 2oljA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
28% identity, 93% coverage: 5:253/269 of query aligns to 7:238/240 of 1ji0A
1oxvD Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 94% coverage: 7:259/269 of query aligns to 6:248/353 of 1oxvD
1oxvA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 94% coverage: 7:259/269 of query aligns to 6:248/353 of 1oxvA
1oxuA Crystal structure of glcv, the abc-atpase of the glucose abc transporter from sulfolobus solfataricus (see paper)
31% identity, 94% coverage: 7:259/269 of query aligns to 6:248/353 of 1oxuA
>WP_012332178.1 NCBI__GCF_000019365.1:WP_012332178.1
MAGALEVRQVSLRFGGVKALTDVGFTVEPGELFSIIGPNGAGKTSMLNCISGRYRPTEGQ
VLFGGNDITRASPNARPKLGIGRTFQNLALFHHMSVLDNIMVGRHHLLRNNFLTGALYWI
PGVRSEELAHRRRVEEIIDFLDLQPYRKAVAGTLSYGLRKRVELARAMALEPKLILLDEP
MAGMNLEEKEDMARYIVDLNEEFGMTVVMIEHDMGVVMDISHRVMVLDFGRRIALGRPEA
VLADPHVRRAYLGEEDEAETPAAPIRAVS
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory