Comparing WP_012333717.1 NCBI__GCF_000019365.1:WP_012333717.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8gmiA Citrate synthase (cita) in mycobacterium tuberculosis modified by ebselen at c143 residue (see paper)
45% identity, 45% coverage: 209:381/386 of query aligns to 173:358/369 of 8gmiA
Sites not aligning to the query:
8gi7A C143a variant of citrate synthase (cita) in mycobacterium tuberculosis (see paper)
45% identity, 45% coverage: 209:381/386 of query aligns to 171:356/368 of 8gi7A
8glbD Selenomethionine derivatized citrate synthase (cita) in mycobacterium tuberculosis with pyruvate (see paper)
45% identity, 45% coverage: 209:381/386 of query aligns to 174:359/374 of 8glbD
Sites not aligning to the query:
P39120 Citrate synthase 2; Citrate synthase II; EC 2.3.3.16 from Bacillus subtilis (strain 168) (see paper)
29% identity, 77% coverage: 84:381/386 of query aligns to 14:364/372 of P39120
6abyA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with oxaloacetate (see paper)
30% identity, 77% coverage: 85:383/386 of query aligns to 15:366/372 of 6abyA
6abxA Crystal structure of citrate synthase (msed_1522) from metallosphaera sedula in complex with citrate (see paper)
30% identity, 77% coverage: 85:383/386 of query aligns to 15:366/370 of 6abxA
1aj8A Citrate synthase from pyrococcus furiosus (see paper)
29% identity, 74% coverage: 92:376/386 of query aligns to 22:358/371 of 1aj8A
6s87D Crystal structure of 2-methylcitrate synthase (prpc) from pseudomonas aeruginosa in complex with oxaloacetate.
35% identity, 47% coverage: 201:381/386 of query aligns to 167:358/365 of 6s87D
2h12B Structure of acetobacter aceti citrate synthase complexed with oxaloacetate and carboxymethyldethia coenzyme a (cmx) (see paper)
34% identity, 49% coverage: 186:376/386 of query aligns to 202:414/426 of 2h12B
6abwA Crystal structure of citrate synthase (msed_0281) from metallosphaera sedula in complex with acetyl-coa (see paper)
28% identity, 77% coverage: 84:380/386 of query aligns to 7:361/369 of 6abwA
3msuA Crystal structure of citrate synthase from francisella tularensis
34% identity, 50% coverage: 189:381/386 of query aligns to 211:414/415 of 3msuA
Sites not aligning to the query:
2ifcC The structure of the binary complex of oxalateacetate with citrate synthase from the thermophilic archaeon thermolasma acidophilum
35% identity, 48% coverage: 195:381/386 of query aligns to 169:374/382 of 2ifcC
4yboB Structure of citrate synthase from the thermoacidophilic euryarchaeon thermolasma acidophilum (see paper)
35% identity, 48% coverage: 195:381/386 of query aligns to 168:373/381 of 4yboB
2r9eA The structure of the binary complex of citryl dethia coa and citrate synthase from the thermophilic archaeonthermoplasma acidophilum
35% identity, 48% coverage: 195:381/386 of query aligns to 169:374/381 of 2r9eA
2r26A The structure of the ternary complex of carboxymethyl coenzyme a and oxalateacetate with citrate synthase from the thermophilic archaeonthermoplasma acidophilum
35% identity, 48% coverage: 195:381/386 of query aligns to 169:374/381 of 2r26A
3msuB Crystal structure of citrate synthase from francisella tularensis
32% identity, 50% coverage: 189:381/386 of query aligns to 211:425/426 of 3msuB
Sites not aligning to the query:
O34002 2-methylcitrate synthase; 2-MCS; MCS; Citrate synthase; EC 2.3.3.5; EC 2.3.3.16 from Antarctic bacterium DS2-3R (see 2 papers)
29% identity, 78% coverage: 84:383/386 of query aligns to 17:379/379 of O34002
Sites not aligning to the query:
1a59A Cold-active citrate synthase (see paper)
29% identity, 78% coverage: 84:383/386 of query aligns to 15:377/377 of 1a59A
4jagA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with oxaloacetate (see paper)
35% identity, 46% coverage: 205:381/386 of query aligns to 223:419/426 of 4jagA
4jaeA Structural determination of the a50t:s279g:s280k:v281k:k282e:h283n variant of citrate synthase from e. Coli complexed with s- carboxymethyl-coa (see paper)
35% identity, 46% coverage: 205:381/386 of query aligns to 223:419/426 of 4jaeA
Sites not aligning to the query:
>WP_012333717.1 NCBI__GCF_000019365.1:WP_012333717.1
MIDTINMREWIDRDAALHALGIKPQTLYAYVSRGRIGMCPDPGDPRRSLYRADDVAALRA
RHIRGRKLADIAAGALAWGEPSLATSISTVHQGTLLYRGVGAVDWARAATLEDTAALLWQ
GDREIRFPAPRVRPREPFAALAALAASGRATLGLGGNGLRGDAATAIGHLAASLGAARGD
APVHRRLAEAWSLGESEGERIRLALILLAEHELNASTFAVRVAASTGASVAAGLLAGLCA
LSGPRHGGAGMALAALMGDARRCGAGEAVAAWLARGRALPGFGHPLYPAGDPRARALLAE
LAPDETARALQEAAFAETGDLPNVDFALACLAEALRLPGDAPLSLFLLGRSVGWSAHFIE
QSAEGGLIRPRARYRGPGPRSGPAGP
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory