SitesBLAST
Comparing WP_012383167.1 NCBI__GCF_000019845.1:WP_012383167.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
Q51742 Ornithine carbamoyltransferase, anabolic; OTCase; EC 2.1.3.3 from Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (see 3 papers)
50% identity, 94% coverage: 16:315/319 of query aligns to 10:311/315 of Q51742
- W22 (≠ R28) mutation to A: Decreased heat stability.
- E26 (≠ D32) mutation to Q: Increased dissociation of dodecamers into trimers.
- M30 (≠ G36) mutation to A: Increased dissociation of dodecamers into trimers.
- W34 (≠ K40) mutation to A: Increased dissociation of dodecamers into trimers.
- Y228 (≠ I232) mutation to C: Becomes active at low temperatures; when associated with G-278.
- A241 (≠ E245) mutation to D: Becomes active at low temperatures; when associated with G-278.
- E278 (= E282) mutation to G: Becomes active at low temperatures; when associated with C-228 or D-241.
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
Q81M99 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Bacillus anthracis
46% identity, 95% coverage: 11:314/319 of query aligns to 9:309/316 of Q81M99
- STRT 57:60 (= STRT 65:68) binding carbamoyl phosphate
- Q84 (= Q92) binding carbamoyl phosphate
- R108 (= R116) binding carbamoyl phosphate
- HPCQ 135:138 (= HPCQ 143:146) binding carbamoyl phosphate
- N166 (= N174) binding L-ornithine
- D230 (= D234) binding L-ornithine
- SM 234:235 (= SM 238:239) binding L-ornithine
- CL 269:270 (= CL 274:275) binding carbamoyl phosphate
- R297 (= R302) binding carbamoyl phosphate
4nf2A Crystal structure of anabolic ornithine carbamoyltransferase from bacillus anthracis in complex with carbamoyl phosphate and l- norvaline
46% identity, 95% coverage: 11:314/319 of query aligns to 5:305/307 of 4nf2A
- active site: R55 (= R67), T56 (= T68), R83 (= R95), R104 (= R116), H131 (= H143), Q134 (= Q146), D226 (= D234), C265 (= C274), R293 (= R302)
- binding phosphoric acid mono(formamide)ester: S53 (= S65), T54 (= T66), R55 (= R67), T56 (= T68), R104 (= R116), H131 (= H143), Q134 (= Q146), C265 (= C274), L266 (= L275), R293 (= R302)
- binding norvaline: L126 (= L138), N162 (= N174), D226 (= D234), S230 (= S238), M231 (= M239)
8qeuA Crystal structure of ornithine transcarbamylase from arabidopsis thaliana (atotc) in complex with ornithine (see paper)
45% identity, 95% coverage: 14:315/319 of query aligns to 2:303/304 of 8qeuA
8qevA Crystal structure of ornithine transcarbamylase from arabidopsis thaliana (atotc) in complex with carbamoyl phosphate (see paper)
44% identity, 95% coverage: 14:315/319 of query aligns to 2:296/297 of 8qevA
P00481 Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Rattus norvegicus (Rat) (see 2 papers)
42% identity, 93% coverage: 5:302/319 of query aligns to 30:330/354 of P00481
- R92 (= R67) mutation to L: Strong decrease in ornithine carbamoyltransferase activity.
- C303 (= C274) mutation to S: Increases KM for ornithine 5-fold and decreases kcat 20-fold.
Sites not aligning to the query:
- 1:32 modified: transit peptide, Mitochondrion
1othA Crystal structure of human ornithine transcarbamoylase complexed with n-phosphonacetyl-l-ornithine (see paper)
41% identity, 92% coverage: 11:302/319 of query aligns to 4:297/321 of 1othA
- active site: R59 (= R67), T60 (= T68), V87 (≠ R95), R108 (= R116), H135 (= H143), Q138 (= Q146), D230 (= D234), C270 (= C274), R297 (= R302)
- binding n-(phosphonoacetyl)-l-ornithine: S57 (= S65), T58 (= T66), R59 (= R67), T60 (= T68), R108 (= R116), L130 (= L138), H135 (= H143), N166 (= N174), D230 (= D234), S234 (= S238), M235 (= M239), C270 (= C274), L271 (= L275), R297 (= R302)
1c9yA Human ornithine transcarbamylase: crystallographic insights into substrate recognition and catalytic mechanism (see paper)
41% identity, 92% coverage: 11:302/319 of query aligns to 4:297/321 of 1c9yA
- active site: R59 (= R67), T60 (= T68), V87 (≠ R95), R108 (= R116), H135 (= H143), Q138 (= Q146), D230 (= D234), C270 (= C274), R297 (= R302)
- binding phosphoric acid mono(formamide)ester: S57 (= S65), T58 (= T66), R59 (= R67), T60 (= T68), R108 (= R116), C270 (= C274), L271 (= L275), R297 (= R302)
- binding norvaline: L130 (= L138), N166 (= N174), D230 (= D234), S234 (= S238), M235 (= M239)
P00480 Ornithine transcarbamylase, mitochondrial; OTCase; Ornithine carbamoyltransferase, mitochondrial; EC 2.1.3.3 from Homo sapiens (Human) (see 31 papers)
41% identity, 92% coverage: 11:302/319 of query aligns to 37:330/354 of P00480
- G39 (≠ P13) to C: in OTCD; late onset; dbSNP:rs72554306
- R40 (≠ K14) to H: in OTCD; late onset; dbSNP:rs72554308
- L43 (= L17) to F: in dbSNP:rs72554309
- K46 (≠ S20) to R: in dbSNP:rs1800321
- Y55 (≠ A29) to D: in OTCD; late onset; dbSNP:rs72554319
- L63 (= L37) to P: in OTCD; late onset; dbSNP:rs72554324
- K88 (≠ Q63) modified: N6-acetyllysine; alternate; to N: in OTCD; late onset; dbSNP:rs72554339
- STRT 90:93 (= STRT 65:68) binding carbamoyl phosphate
- G100 (≠ A75) to D: in OTCD; late onset; dbSNP:rs72554349
- F101 (≠ M76) to L: in dbSNP:rs1133135
- L111 (= L86) to P: in dbSNP:rs1800324
- T125 (≠ A100) to M: in OTCD; neonatal; dbSNP:rs72554356
- D126 (= D101) to G: in OTCD; early onset; loss of ornithine carbamoyltransferase activity; 0.9% of wild-type activity; dbSNP:rs72554358
- R129 (= R104) to H: in OTCD; early onset; decreased ornithine carbamoyltransferase activity; 2.1% of wild-type activity; dbSNP:rs66656800
- A140 (≠ I115) to P: in OTCD; late onset; dbSNP:rs72556260
- R141 (= R116) binding carbamoyl phosphate; to Q: in OTCD; most common variant; loss of ornithine carbamoyltransferase activity; activity is 100-fold lower; dbSNP:rs68026851
- H168 (= H143) binding carbamoyl phosphate
- Q171 (= Q146) binding carbamoyl phosphate
- I172 (= I147) to M: in OTCD; early onset; loss of ornithine carbamoyltransferase activity; dbSNP:rs72556280
- Y176 (≠ L151) to C: in OTCD; late onset; dbSNP:rs72556283
- TL 178:179 (≠ TF 153:154) natural variant: Missing (in OTCD; neonatal)
- Y183 (≠ R158) to D: in OTCD; late onset; dbSNP:rs72556292
- G188 (= G163) to R: in OTCD; neonatal; dbSNP:rs72556294
- G195 (= G170) to R: in OTCD; loss of ornithine carbamoyltransferase activity; dbSNP:rs67294955
- D196 (= D171) to V: in OTCD; neonatal; decreased ornithine carbamoyltransferase activity; 3.7% activity; dbSNP:rs72556300
- L201 (= L176) to P: in OTCD; neonatal; dbSNP:rs72558407
- S207 (≠ A182) to R: in OTCD; neonatal; dbSNP:rs72558415
- A209 (≠ R184) to V: in OTCD; neonatal; dbSNP:rs72558417
- M213 (≠ F188) to K: in OTCD; late onset
- H214 (≠ T189) to Y: in OTCD; neonatal; dbSNP:rs72558420
- P220 (= P195) to A: in OTCD; late onset; dbSNP:rs72558425
- P225 (= P200) to T: in OTCD; late onset; dbSNP:rs72558428
- L244 (= L215) to Q: in OTCD; late onset; dbSNP:rs72558436
- T262 (≠ S233) to K: in OTCD; mild; dbSNP:rs67333670
- T264 (≠ C235) to A: in OTCD; late onset; decreased ornithine carbamoyltransferase activity; 8.9% activity; dbSNP:rs72558444; to I: in OTCD; late onset; dbSNP:rs67156896
- W265 (= W236) to L: in OTCD; mild; dbSNP:rs72558446
- G269 (= G240) to E: in OTCD; neonatal; dbSNP:rs72558450
- Q270 (≠ D241) to R: in dbSNP:rs1800328
- E272 (= E243) natural variant: Missing (in OTCD; late onset; dbSNP:rs72558452)
- R277 (= R248) to Q: in OTCD; late onset; dbSNP:rs66724222; to W: in OTCD; late onset; dbSNP:rs72558454
- H302 (= H273) to L: in OTCD; female; late onset; dbSNP:rs67993095; to Y: in OTCD; neonatal; dbSNP:rs72558463
- C303 (= C274) to R: in OTCD; neonatal; dbSNP:rs67468335
- CL 303:304 (= CL 274:275) binding carbamoyl phosphate
- E309 (= E281) natural variant: Missing (in OTCD; late onset)
- R330 (= R302) binding carbamoyl phosphate
Sites not aligning to the query:
- 1:32 modified: transit peptide, Mitochondrion
- 15 R→G: Loss of cleavage of the transit peptide and loss of localization to mitochondrial matrix; when associated with G-23 and G-26.
- 23 R→G: Loss of cleavage of the transit peptide and loss of localization to mitochondrial matrix; when associated with G-15 and G-26.
- 26 R→G: Loss of cleavage of the transit peptide and loss of localization to mitochondrial matrix; when associated with G-15 and G-23.
- 333 natural variant: T -> A
- 340 S → P: in OTCD; late onset; dbSNP:rs72558489
- 343 T → K: in OTCD; late onset; dbSNP:rs72558491
7nouA Crystal structure of mycobacterium tuberculosis argf in complex with (3,5-dichlorophenyl)boronic acid.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7nouA
- active site: R102 (= R116), H129 (= H143), Q132 (= Q146), D225 (= D234), C265 (= C274), R293 (= R302)
- binding [3,5-bis(chloranyl)phenyl]-oxidanyl-oxidanylidene-boron: I46 (≠ V60), T52 (= T66), R53 (= R67), R53 (= R67), F56 (≠ V70), F56 (≠ V70), L79 (= L93), D82 (≠ G96), E83 (= E97), V91 (= V105), Y95 (≠ F109), L266 (= L275), R293 (= R302)
7nosA Crystal structure of mycobacterium tuberculosis argf in complex with 4-bromo-6-(trifluoromethyl)-1h-benzo[d]imidazole.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7nosA
7norA Crystal structure of mycobacterium tuberculosis argf in complex with 2-fluoro-4-hydroxybenzonitrile.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7norA
7nnyA Crystal structure of mycobacterium tuberculosis argf in complex with naphthalen-1-ol.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7nnyA
- active site: R102 (= R116), H129 (= H143), Q132 (= Q146), D225 (= D234), C265 (= C274), R293 (= R302)
- binding 1-naphthol: T52 (= T66), R53 (= R67), F56 (≠ V70), E83 (= E97), V91 (= V105), Y95 (≠ F109)
7nnwA Crystal structure of mycobacterium tuberculosis argf in complex with methyl 4-hydroxy-3-iodobenzoate.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7nnwA
- active site: R102 (= R116), H129 (= H143), Q132 (= Q146), D225 (= D234), C265 (= C274), R293 (= R302)
- binding methyl 3-iodanyl-4-oxidanyl-benzoate: I46 (≠ V60), T52 (= T66), R53 (= R67), F56 (≠ V70), L79 (= L93), L92 (= L106), Y95 (≠ F109)
7nnvA Crystal structure of mycobacterium tuberculosis argf in complex with carbamoyl phosphate.
43% identity, 94% coverage: 14:314/319 of query aligns to 4:305/308 of 7nnvA
- active site: R102 (= R116), H129 (= H143), Q132 (= Q146), D225 (= D234), C265 (= C274), R293 (= R302)
- binding phosphoric acid mono(formamide)ester: S51 (= S65), T52 (= T66), R53 (= R67), T54 (= T68), R102 (= R116), H129 (= H143), C265 (= C274), L266 (= L275), R293 (= R302)
P9WIT9 Ornithine carbamoyltransferase; OTCase; EC 2.1.3.3 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
43% identity, 94% coverage: 14:314/319 of query aligns to 3:304/307 of P9WIT9
- STRT 50:53 (= STRT 65:68) binding carbamoyl phosphate
- Q77 (= Q92) binding carbamoyl phosphate
- R101 (= R116) binding carbamoyl phosphate
- HPCQ 128:131 (= HPCQ 143:146) binding carbamoyl phosphate
- N160 (= N174) binding L-ornithine
- D224 (= D234) binding L-ornithine
- SM 228:229 (= SM 238:239) binding L-ornithine
- CL 264:265 (= CL 274:275) binding carbamoyl phosphate
- R292 (= R302) binding carbamoyl phosphate
2i6uA Crystal structure of ornithine carbamoyltransferase complexed with carbamoyl phosphate and l-norvaline from mycobacterium tuberculosis (rv1656) at 2.2 a (see paper)
43% identity, 94% coverage: 14:314/319 of query aligns to 3:304/307 of 2i6uA
- active site: R52 (= R67), T53 (= T68), R80 (= R95), R101 (= R116), H128 (= H143), Q131 (= Q146), D224 (= D234), C264 (= C274), R292 (= R302)
- binding phosphoric acid mono(formamide)ester: S50 (= S65), T51 (= T66), R52 (= R67), T53 (= T68), R101 (= R116), C264 (= C274), L265 (= L275), R292 (= R302)
- binding norvaline: L123 (= L138), N160 (= N174), D224 (= D234), S228 (= S238), M229 (= M239)
7np0A Crystal structure of mycobacterium tuberculosis argf in complex with (4-nitrophenyl)boronic acid.
42% identity, 94% coverage: 14:314/319 of query aligns to 4:302/305 of 7np0A
7novA Crystal structure of mycobacterium tuberculosis argf in complex with (4-methyl-3-nitrophenyl)boronic acid.
42% identity, 94% coverage: 14:314/319 of query aligns to 4:299/302 of 7novA
- active site: R96 (= R116), H123 (= H143), Q126 (= Q146), D219 (= D234), C259 (= C274), R287 (= R302)
- binding (4-methyl-3-nitro-phenyl)-oxidanyl-oxidanylidene-boron: R53 (= R67), F56 (≠ V70), E77 (= E97), V85 (= V105), Y89 (≠ F109), L260 (= L275), A284 (= A299), R287 (= R302)
7nnzB Crystal structure of mycobacterium tuberculosis argf in complex with 5-methyl-4-phenylthiazol-2-amine.
41% identity, 94% coverage: 14:314/319 of query aligns to 3:294/297 of 7nnzB
Query Sequence
>WP_012383167.1 NCBI__GCF_000019845.1:WP_012383167.1
MTPLPVSDLIVQPKHFLDLSRLEAKDLRAILDLAAGLKAKRRRGQKAKEQPLEGKVLAMV
FDQPSTRTRVSFDLAMRELGGETIMLTGQEMQLGRGETIADTARVLSRFVDAIVIRILNH
ADLLELAEYAEVPVINGLTKLSHPCQIMADLLTFEEHRGPIKGRTIAWTGDSNNVLASWI
EAARRLDFTLNVACPAELSPAPELVAFANAQGKRLNVLRDPFEAVRGADAVISDCWVSMG
DEEEEARRQALLSPYQVNAELMATAAKDAIFMHCLPAHRGEEVTDEVIDGPQSVVFDEAE
NRLHAQKGILAWCFGVTGS
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory