SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012385833.1 NCBI__GCF_000019845.1:WP_012385833.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

O31645 PTS system mannose-specific EIIBCA component; EIIBCA-Man; EII-Man; EC 2.7.1.191 from Bacillus subtilis (strain 168) (see 2 papers)
30% identity, 95% coverage: 3:149/154 of query aligns to 502:650/650 of O31645

query
sites
O31645
L
 
L
T
 
T
E
 
D
L
 
I
I
 
I
A
 
S
A
 
P
E
 
E
A
 
L
V
 
I
I
 
E
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P
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N
L
 
L
K
 
S
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G
N
 
E
T
 
T
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S
K
 
D
Q
 
D
A
 
I
L
 
I
L
 
D
D
 
E
L
 
L
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I
N
 
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K
A
 
L
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R
I
 
R
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G
G
 
A
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L
D
 
L
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E
E
 
S
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G
F
 
F
-
 
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A
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I
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L
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N
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R
E
 
E
R
 
Q
L
 
Q
G
 
G
S
 
T
T
 
T
G
 
A
I
 
I
G
 
G
S
 
M
G
 
N
V
 
I
A
 
A
I
 
I
P
 
P
H
 
H
A
 
G
K
 
K
L
 
S
D
 
E
-
 
A
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V
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E
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P
T
 
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-
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-
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A
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F
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G
R
 
I
L
 
K
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R
R
 
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P
 
G
I
 
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D
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D
 
N
A
 
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I
 
L
D
 
D
G
 
G
V
 
S
P
 
E
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A
D
 
K
L
 
L
I
 
I
C
 
F
L
 
M
L
 
I
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A
T
 
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P
 
P
-
 
K
E
 
E
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G
 
G
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H
L
 
L
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I
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L
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M
L
 
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R
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M
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D
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E
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R
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L
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L
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E
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E
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A
Y
 
Y
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K
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L
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L
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E
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E
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I
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E

Sites not aligning to the query:

P46321 Probable licABCH operon regulator; EC 2.7.1.- from Bacillus subtilis (strain 168) (see paper)
28% identity, 75% coverage: 37:151/154 of query aligns to 530:641/641 of P46321

query
sites
P46321
G
 
G
L
 
F
D
 
A
A
 
D
R
 
E
E
 
E
I
 
I
F
 
I
D
 
D
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S
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I
L
 
F
Q
 
E
R
 
R
E
 
E
R
 
D
L
 
M
G
 
S
S
 
P
T
 
T
G
 
C
I
 
F
G
 
G
S
 
N
G
 
L
V
 
V
A
 
A
I
 
I
P
 
P
H
|
H
A
 
P
K
 
L
L
 
V
D
 
P
K
 
Q
A
 
T
P
 
K
T
 
T
I
 
T
F
 
F
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W
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A
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V
A
 
C
R
 
T
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L
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K
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K
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P
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I
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D
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D
 
E
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-
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-
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F
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V
C
 
C
L
 
L
L
 
L
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C
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E
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E
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A
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D
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L
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M
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Y
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K
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L
L
 
L
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D
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M
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L
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S

Sites not aligning to the query:

Query Sequence

>WP_012385833.1 NCBI__GCF_000019845.1:WP_012385833.1
MLLTELIAAEAVIPSLKANTKKQALLDLSNRAAQISGLDAREIFDVVLQRERLGSTGIGS
GVAIPHAKLDKAPTIFGVFARLVRPIDFDAIDGVPVDLICLLITPESAGADHLKALARLA
RLFRGPGVIEKLRAARDGSALYSVLTEEETSRAA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory