Comparing WP_012405894.1 NCBI__GCF_000020045.1:WP_012405894.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q1JUQ0 L-2-keto-3-deoxyarabonate dehydratase; L-KDA dehydratase; 2-dehydro-3-deoxy-L-arabinonate dehydratase; L-2-keto-3-deoxyarabinonate dehydratase; EC 4.2.1.43 from Azospirillum brasilense (see paper)
80% identity, 100% coverage: 1:309/309 of query aligns to 1:309/309 of Q1JUQ0
4ptnA Crystal structure of yage, a kdg aldolase protein in complex with magnesium cation coordinated l-glyceraldehyde (see paper)
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 4ptnA
4onvA Crystal structure of yage, a kdg aldolase protein in complex with 2- keto-3-deoxy gluconate
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 4onvA
4oe7D Crystal structure of yage, a kdg aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 4oe7D
4oe7B Crystal structure of yage, a kdg aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 4oe7B
4oe7A Crystal structure of yage, a kdg aldolase protein, in complex with aldol condensed product of pyruvate and glyoxal
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 4oe7A
3nevA Crystal structure of yage, a prophage protein from e. Coli k12 in complex with kdgal (see paper)
29% identity, 91% coverage: 7:287/309 of query aligns to 1:279/298 of 3nevA
3na8A Crystal structure of a putative dihydrodipicolinate synthetase from pseudomonas aeruginosa
30% identity, 90% coverage: 7:285/309 of query aligns to 1:275/291 of 3na8A
Q9X1K9 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
26% identity, 89% coverage: 9:282/309 of query aligns to 2:273/294 of Q9X1K9
1o5kA Crystal structure of dihydrodipicolinate synthase (tm1521) from thermotoga maritima at 1.80 a resolution
26% identity, 89% coverage: 9:282/309 of query aligns to 3:274/295 of 1o5kA
3l21B The crystal structure of a dimeric mutant of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosis - dhdps- a204r
26% identity, 91% coverage: 7:288/309 of query aligns to 5:279/295 of 3l21B
5j5dA Crystal structure of dihydrodipicolinate synthase from mycobacterium tuberculosis in complex with alpha-ketopimelic acid (see paper)
26% identity, 91% coverage: 7:288/309 of query aligns to 7:281/297 of 5j5dA
P9WP25 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
26% identity, 91% coverage: 7:288/309 of query aligns to 10:284/300 of P9WP25
1xxxA Crystal structure of dihydrodipicolinate synthase (dapa, rv2753c) from mycobacterium tuberculosis (see paper)
26% identity, 91% coverage: 7:288/309 of query aligns to 6:280/296 of 1xxxA
3qfeA Crystal structures of a putative dihydrodipicolinate synthase family protein from coccidioides immitis
27% identity, 75% coverage: 14:246/309 of query aligns to 13:239/305 of 3qfeA
Sites not aligning to the query:
5c55A Crystal structure of the y138f mutant of c.Glutamicum n- acetylneuraminic acid lyase in complex with pyruvate
28% identity, 79% coverage: 9:253/309 of query aligns to 2:244/307 of 5c55A
Q8UGL3 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58)) (see paper)
23% identity, 78% coverage: 9:250/309 of query aligns to 2:240/294 of Q8UGL3
4i7wA Agrobacterium tumefaciens dhdps with lysine and pyruvate
23% identity, 78% coverage: 9:250/309 of query aligns to 2:240/294 of 4i7wA
2atsA Dihydrodipicolinate synthase co-crystallised with (s)-lysine
22% identity, 89% coverage: 9:282/309 of query aligns to 2:271/292 of 2atsA
P0A6L2 4-hydroxy-tetrahydrodipicolinate synthase; HTPA synthase; EC 4.3.3.7 from Escherichia coli (strain K12) (see 7 papers)
22% identity, 89% coverage: 9:282/309 of query aligns to 2:271/292 of P0A6L2
>WP_012405894.1 NCBI__GCF_000020045.1:WP_012405894.1
MTSQTIARYRGIFPVVPTTFTETGALDLESQKRVVDFMIDAGSDGLCILANFSEQFALSD
EERETLTRTMLEHVAGRVPVIVTTSHYSSAVCVERSRRAQEQGASMVMVMPPYHGATFRV
PETQIYEFYARLSDGIDIPVMIQDAPASGTVLSAPFLARMARELEQVSYFKIETPGAAAK
LRELIRLGGDAVEGPWDGEEAITLFADLNAGATGSMTGGGYPDGIRPILEAFREGRRDEA
FTLYQRWLPLINHENRQTGLLAAKALMKEGGVIACESPRHPLPAMHPDTRAELIDIARRL
DPLVLRWGK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory