SitesBLAST
Comparing WP_012407473.1 NCBI__GCF_000020025.1:WP_012407473.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3wx9A Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with pmp, gla, 4ad, 2og, glu and kya
38% identity, 92% coverage: 29:396/399 of query aligns to 24:399/404 of 3wx9A
- binding 4-(2-aminophenyl)-2,4-dioxobutanoic acid: G40 (= G41), L41 (= L42)
- binding 2-oxoglutaric acid: D213 (= D212), P214 (≠ A213), Y215 (= Y214), G216 (≠ S215), E217 (≠ D216), G241 (≠ S240), T242 (= T241), I246 (= I245)
- binding (2E)-pent-2-enedioic acid: G40 (= G41), Y130 (≠ F129), N184 (= N183), R376 (= R373)
- binding glutamic acid: L131 (= L130), V360 (≠ L357), A364 (≠ R361), R369 (≠ G366)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G104 (= G103), S105 (= S104), Q106 (≠ G105), Y130 (≠ F129), N184 (= N183), D212 (= D211), P214 (≠ A213), Y215 (= Y214), T242 (= T241), S244 (= S243), K245 (= K244), R252 (= R251)
Sites not aligning to the query:
3av7A Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with pmp, kyn as substrates and kya as products
38% identity, 92% coverage: 29:396/399 of query aligns to 24:399/404 of 3av7A
- binding 4-hydroxyquinoline-2-carboxylic acid: L131 (= L130), Q135 (≠ T134), A364 (≠ R361), R369 (≠ G366)
- binding (2S)-2-amino-4-(2-aminophenyl)-4-oxobutanoic acid: G40 (= G41), Y130 (≠ F129), L131 (= L130), A132 (≠ G131), N184 (= N183), R376 (= R373)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G104 (= G103), S105 (= S104), Q106 (≠ G105), Y130 (≠ F129), V179 (≠ I178), N184 (= N183), D212 (= D211), P214 (≠ A213), Y215 (= Y214), T242 (= T241), S244 (= S243), K245 (= K244), R252 (= R251)
Sites not aligning to the query:
3aowC Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with akg
38% identity, 92% coverage: 29:396/399 of query aligns to 24:399/404 of 3aowC
- binding 2-oxoglutaric acid: Y70 (= Y71), Y130 (≠ F129), L275 (≠ V274)
- binding pyridoxal-5'-phosphate: G104 (= G103), S105 (= S104), Q106 (≠ G105), Y130 (≠ F129), V179 (≠ I178), N184 (= N183), D212 (= D211), P214 (≠ A213), Y215 (= Y214), T242 (= T241), S244 (= S243), K245 (= K244), R252 (= R251)
Sites not aligning to the query:
3aovA Crystal structure of pyrococcus horikoshii kynurenine aminotransferase in complex with plp
38% identity, 92% coverage: 29:396/399 of query aligns to 24:399/404 of 3aovA
- binding pyridoxal-5'-phosphate: G104 (= G103), S105 (= S104), Q106 (≠ G105), Y130 (≠ F129), V179 (≠ I178), N184 (= N183), D212 (= D211), P214 (≠ A213), Y215 (= Y214), T242 (= T241), S244 (= S243), K245 (= K244), R252 (= R251)
1wstA Crystal structure of multiple substrate aminotransferase (msat) from thermococcus profundus
36% identity, 96% coverage: 13:396/399 of query aligns to 6:397/403 of 1wstA
- binding pyridoxal-5'-phosphate: G102 (= G103), S103 (= S104), Q104 (≠ G105), Y128 (≠ F129), V177 (≠ I178), N182 (= N183), D210 (= D211), P212 (≠ A213), Y213 (= Y214), T240 (= T241), S242 (= S243), K243 (= K244), R250 (= R251)
2zyjA Crystal structure of lysn, alpha-aminoadipate aminotransferase (complexed with n-(5'-phosphopyridoxyl)-l-glutamate), from thermus thermophilus hb27 (see paper)
35% identity, 91% coverage: 36:398/399 of query aligns to 35:393/397 of 2zyjA
- binding N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid: G39 (≠ Y40), G40 (= G41), G99 (= G103), S100 (= S104), Q101 (≠ G105), Y125 (≠ F129), N174 (= N183), D202 (= D211), Y205 (= Y214), S235 (≠ T241), S237 (= S243), K238 (= K244), R245 (= R251), R368 (= R373)
Sites not aligning to the query:
Q72LL6 2-aminoadipate transaminase; 2-aminoadipate aminotransferase; Alpha-aminoadipate aminotransferase; AAA-AT; AadAT; EC 2.6.1.39 from Thermus thermophilus (strain ATCC BAA-163 / DSM 7039 / HB27) (see 2 papers)
35% identity, 91% coverage: 36:398/399 of query aligns to 35:393/397 of Q72LL6
- G40 (= G41) binding substrate
- Y70 (= Y71) binding pyridoxal 5'-phosphate
- N174 (= N183) binding pyridoxal 5'-phosphate; binding substrate
- R245 (= R251) binding pyridoxal 5'-phosphate
- R368 (= R373) binding substrate
Sites not aligning to the query:
- 20 S→E: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate. Increases the affinity for leucine and 2-oxoisocaproate.
- 23 R→A: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate which has the same chain length as Glu, but differs by the presence of a 2-oxo group which is not recognized by R-23. Increases the affinity for leucine and 2-oxoisocaproate due to the absence of gamma-carboxyl group.; R→Q: Strongly decreases the affinity for AAA and Glu. A mild decrease of affinity is observed for 2-oxoglutarate which has the same chain length as Glu, but differs by the presence of a 2-oxo group which is not recognized by R-23. Increases the affinity for leucine and 2-oxoisocaproate due to the absence of gamma-carboxyl group.
3cbfA Crystal structure of lysn, alpha-aminoadipate aminotransferase, from thermus thermophilus hb27 (see paper)
35% identity, 91% coverage: 36:398/399 of query aligns to 31:389/392 of 3cbfA
- binding (2S)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]hexanedioic acid: G35 (≠ Y40), G36 (= G41), G95 (= G103), S96 (= S104), Q97 (≠ G105), Y121 (≠ F129), N170 (= N183), D198 (= D211), Y201 (= Y214), S231 (≠ T241), S233 (= S243), K234 (= K244), R241 (= R251), R364 (= R373)
Sites not aligning to the query:
2egyA Crystal structure of lysn, alpha-aminoadipate aminotransferase (substrate free form), from thermus thermophilus hb27
35% identity, 91% coverage: 36:398/399 of query aligns to 31:389/392 of 2egyA
- binding pyridoxal-5'-phosphate: G95 (= G103), S96 (= S104), Q97 (≠ G105), Y121 (≠ F129), N170 (= N183), D198 (= D211), A200 (= A213), Y201 (= Y214), S231 (≠ T241), S233 (= S243), K234 (= K244), R241 (= R251)
2z1yA Crystal structure of lysn, alpha-aminoadipate aminotransferase (complexed with n-(5'-phosphopyridoxyl)-l-leucine), from thermus thermophilus hb27
35% identity, 91% coverage: 36:398/399 of query aligns to 27:385/389 of 2z1yA
- binding leucine: G32 (= G41), Y117 (≠ F129), R360 (= R373)
- binding pyridoxal-5'-phosphate: G91 (= G103), S92 (= S104), Q93 (≠ G105), Y117 (≠ F129), N166 (= N183), D194 (= D211), Y197 (= Y214), S227 (≠ T241), S229 (= S243), K230 (= K244), R237 (= R251)
1vp4A Crystal structure of a putative aminotransferase (tm1131) from thermotoga maritima msb8 at 1.82 a resolution
32% identity, 90% coverage: 36:395/399 of query aligns to 41:410/420 of 1vp4A
- binding pyridoxal-5'-phosphate: G112 (= G103), S113 (= S104), Q114 (≠ G105), Y138 (≠ F129), N194 (= N183), D222 (= D211), P224 (≠ A213), Y225 (= Y214), T252 (= T241), S254 (= S243), K255 (= K244), R262 (= R251)
2zc0A Crystal structure of an archaeal alanine:glyoxylate aminotransferase (see paper)
33% identity, 92% coverage: 28:396/399 of query aligns to 27:402/405 of 2zc0A
- active site: Y132 (≠ F129), D214 (= D211), A216 (= A213), S246 (= S243)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: G106 (= G103), G107 (≠ S104), T108 (≠ G105), Y132 (≠ F129), N186 (= N183), D214 (= D211), A216 (= A213), Y217 (= Y214), T244 (= T241), S246 (= S243), K247 (= K244), R254 (= R251)
8tn3A Structure of s. Hygroscopicus aminotransferase mppq complexed with pyridoxamine 5'-phosphate (pmp) (see paper)
34% identity, 88% coverage: 29:380/399 of query aligns to 15:372/388 of 8tn3A
4ge4A Kynurenine aminotransferase ii inhibitors (see paper)
25% identity, 96% coverage: 15:396/399 of query aligns to 10:416/422 of 4ge4A
- binding (5-hydroxy-4-{[(1-hydroxy-7-methoxy-2-oxo-1,2-dihydroquinolin-3-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: I19 (≠ P24), G34 (≠ Y40), G35 (= G41), L36 (= L42), Y68 (= Y71), G110 (= G103), S111 (= S104), Q112 (≠ G105), Y136 (≠ F129), N196 (= N183), D224 (= D211), P226 (≠ A213), Y227 (= Y214), S254 (≠ T241), S256 (= S243), K257 (= K244), R264 (= R251), R393 (= R373)
4gebA Kynurenine aminotransferase ii inhibitors (see paper)
25% identity, 90% coverage: 36:396/399 of query aligns to 34:422/428 of 4gebA
- binding (5-hydroxy-4-{[(7-hydroxy-6-oxo-2-phenyl-6,7-dihydro-2H-pyrazolo[3,4-b]pyridin-5-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: G39 (= G41), L40 (= L42), Y74 (= Y71), S117 (= S104), Q118 (≠ G105), Y142 (≠ F129), N202 (= N183), D230 (= D211), P232 (≠ A213), Y233 (= Y214), S260 (≠ T241), S262 (= S243), K263 (= K244), R270 (= R251), R399 (= R373)
4ge9A Kynurenine aminotransferase ii inhibitors (see paper)
25% identity, 90% coverage: 36:396/399 of query aligns to 34:422/428 of 4ge9A
- binding (4-{[(6-benzyl-1-hydroxy-7-methoxy-2-oxo-1,2-dihydroquinolin-3-yl)amino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate: G39 (= G41), L40 (= L42), Y74 (= Y71), S75 (≠ G72), S77 (≠ P74), S117 (= S104), Q118 (≠ G105), Y142 (≠ F129), N202 (= N183), D230 (= D211), P232 (≠ A213), Y233 (= Y214), S260 (≠ T241), S262 (= S243), R270 (= R251), L293 (≠ V274), R399 (= R373)
Sites not aligning to the query:
4ge7A Kynurenine aminotransferase ii inhibitors (see paper)
25% identity, 90% coverage: 36:396/399 of query aligns to 34:422/428 of 4ge7A
- binding (5-hydroxy-4-{[(1-hydroxy-2-oxo-6-phenoxy-1,2-dihydroquinolin-3-yl)amino]methyl}-6-methylpyridin-3-yl)methyl dihydrogen phosphate: G39 (= G41), Y74 (= Y71), S75 (≠ G72), S77 (≠ P74), S117 (= S104), Q118 (≠ G105), Y142 (≠ F129), N202 (= N183), D230 (= D211), P232 (≠ A213), Y233 (= Y214), S260 (≠ T241), S262 (= S243), R270 (= R251), L293 (≠ V274), R399 (= R373)
Sites not aligning to the query:
4gdyB Kynurenine aminotransferase ii inhibitors
25% identity, 90% coverage: 36:396/399 of query aligns to 34:422/428 of 4gdyB
- binding (5-hydroxy-6-methyl-4-{[(1-oxo-7-phenoxy-1,2-dihydro[1,2,4]triazolo[4,3-a]quinolin-4-yl)amino]methyl}pyridin-3-yl)methyl dihydrogen phosphate: G39 (= G41), Y74 (= Y71), S75 (≠ G72), G116 (= G103), S117 (= S104), Q118 (≠ G105), Y142 (≠ F129), N202 (= N183), D230 (= D211), P232 (≠ A213), S260 (≠ T241), S262 (= S243), R270 (= R251), R399 (= R373)
Sites not aligning to the query:
2xh1A Crystal structure of human kat ii-inhibitor complex (see paper)
25% identity, 91% coverage: 34:396/399 of query aligns to 19:409/412 of 2xh1A
- binding (3s)-10-(4-aminopiperazin-1-yl)-9-fluoro-7-hydroxy-3-methyl-2,3-dihydro-8h-[1,4]oxazino[2,3,4-ij]quinoline-6-carboxylate: G26 (= G41), L27 (= L42), Y61 (= Y71), L280 (≠ V274)
- binding pyridoxal-5'-phosphate: S104 (= S104), Q105 (≠ G105), Y129 (≠ F129), D217 (= D211), P219 (≠ A213), S247 (≠ T241), S249 (= S243), R257 (= R251)
6t8qA Hkatii in complex with ligand (2r)-n-benzyl-1-[6-methyl-5-(oxan-4-yl)- 7-oxo-6h,7h-[1,3]thiazolo[5,4-d]pyrimidin-2-yl]pyrrolidine-2- carboxamide (see paper)
25% identity, 90% coverage: 36:396/399 of query aligns to 37:425/428 of 6t8qA
Query Sequence
>WP_012407473.1 NCBI__GCF_000020025.1:WP_012407473.1
MVSTTPAYRITDLFAERAKNLAPPTYGTELSKIVTVSFAYGLADPILFPHTDLAAASAVV
LAEEAPIALNYGPPSAQLYEQIILRLQAKGIAADRDRLIIGYGSGQILGLLPDVFVEPGD
VVIVEGPTFLGVVTRFVHAGARIITIPVDELGMDVDALEVTLNDLKKQGIRPRFIYTIPT
FHNPTGATMPLFRRQKLVALAAEYGVLIVEDDAYSDLRFRGETMPSLATLDQEGWVLYVS
TFSKIIAPGIRLGWACGDATIIERLAMFKSEGTVGPFVSHVVARYCATGKLDNHIQELIA
CYKHKCNLLLEAIAQEFPSDVVALRPDGGFFVWCKLPPDISAKALLMAASEHGISFLPGT
RCYANGQGDDAIRLAFSFQPTQKIVEGIATLGSVLRGLR
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory