SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012409901.1 NCBI__GCF_000020025.1:WP_012409901.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
32% identity, 94% coverage: 2:92/97 of query aligns to 2:92/564 of 3al0C

query
sites
3al0C
I
 
V
D
 
T
Q
 
K
E
 
D
Q
 
L
V
 
V
H
 
L
K
 
H
V
 
L
A
 
E
N
 
N
L
 
L
A
 
A
R
 
R
L
 
L
E
 
E
L
 
L
T
 
S
P
 
E
E
 
D
E
 
Q
E
 
R
E
 
E
Q
 
S
F
 
L
T
 
M
T
 
K
Q
 
D
L
 
F
G
 
Q
S
 
E
I
 
I
L
 
L
D
 
D
Y
 
Y
I
 
V
Q
 
E
Q
 
L
L
 
L
D
 
N
E
 
E
L
 
V
D
 
D
V
 
V
S
 
E
N
 
G
V
 
V
P
 
E
P
 
P
T
 
M
T
 
Y
R
 
T
A
 
P
I
 
V
D
 
E
V
 
D
S
 
S
N
 
A
I
 
K
T
 
L
R
 
R
E
 
K
D
 
G
E
 
D
L
 
P
Q
 
R
P
 
F
Y
 
F
A
 
E
N
 
M
R
 
R
E
 
D
S
 
L
I
 
I
L
 
K
N
 
K
S
 
N
A
 
F
P
 
P
E
 
E
Q
 
E
E
 
K
G
 
D
E
 
G
F
 
H
F
 
I
K
 
K
V
 
V
P
 
P
K
 
G
I
 
I

Sites not aligning to the query:

Query Sequence

>WP_012409901.1 NCBI__GCF_000020025.1:WP_012409901.1
MIDQEQVHKVANLARLELTPEEEEQFTTQLGSILDYIQQLDELDVSNVPPTTRAIDVSNI
TREDELQPYANRESILNSAPEQEGEFFKVPKILNSNE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory