Comparing WP_012465488.1 NCBI__GCF_000020465.1:WP_012465488.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 16 hits to proteins with known functional sites (download)
P36683 Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli (strain K12) (see 2 papers)
63% identity, 99% coverage: 3:848/856 of query aligns to 1:851/865 of P36683
1l5jA Crystal structure of e. Coli aconitase b. (see paper)
63% identity, 99% coverage: 3:848/856 of query aligns to 1:851/862 of 1l5jA
4kp1A Crystal structure of ipm isomerase large subunit from methanococcus jannaschii (mj0499) (see paper)
27% identity, 52% coverage: 372:815/856 of query aligns to 1:417/423 of 4kp1A
4nqyA The reduced form of mj0499 (see paper)
26% identity, 52% coverage: 374:815/856 of query aligns to 2:404/409 of 4nqyA
P19414 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see 2 papers)
25% identity, 41% coverage: 464:815/856 of query aligns to 163:502/778 of P19414
Sites not aligning to the query:
P39533 Homocitrate dehydratase, mitochondrial; Aconitase 2; EC 4.2.1.- from Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) (see paper)
25% identity, 43% coverage: 442:813/856 of query aligns to 138:505/789 of P39533
Sites not aligning to the query:
O14289 3-isopropylmalate dehydratase; Alpha-IPM isomerase; IPMI; Isopropylmalate isomerase; EC 4.2.1.33 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
26% identity, 40% coverage: 477:822/856 of query aligns to 129:479/758 of O14289
Sites not aligning to the query:
1nisA Crystal structure of aconitase with trans-aconitate and nitrocitrate bound (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 1nisA
Sites not aligning to the query:
8acnA Crystal structures of aconitase with isocitrate and nitroisocitrate bound (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 8acnA
Sites not aligning to the query:
1fghA Complex with 4-hydroxy-trans-aconitate (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 1fghA
Sites not aligning to the query:
1amjA Steric and conformational features of the aconitase mechanism (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 1amjA
Sites not aligning to the query:
1amiA Steric and conformational features of the aconitase mechanism (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 1amiA
Sites not aligning to the query:
1acoA Crystal structure of aconitase with transaconitate bound (see paper)
23% identity, 41% coverage: 464:815/856 of query aligns to 139:477/753 of 1acoA
Sites not aligning to the query:
P20004 Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Bos taurus (Bovine) (see 2 papers)
23% identity, 41% coverage: 464:815/856 of query aligns to 167:505/780 of P20004
Sites not aligning to the query:
A0QX20 Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
24% identity, 31% coverage: 420:687/856 of query aligns to 126:387/943 of A0QX20
Sites not aligning to the query:
D9X0I3 Aconitate hydratase A; ACN; Aconitase; EC 4.2.1.3 from Streptomyces viridochromogenes (strain DSM 40736 / JCM 4977 / BCRC 1201 / Tue 494) (see paper)
25% identity, 33% coverage: 405:687/856 of query aligns to 84:379/931 of D9X0I3
Sites not aligning to the query:
>WP_012465488.1 NCBI__GCF_000020465.1:WP_012465488.1
MSLVSQYRAHTEERALLGIPPLPLTADQARSLIGLLQQQPVEEKEYLLELFCEHVSPGVD
DAAFEKAAFLDAVIKGESICEVITPVEAVRILGTMLGGYNVKPLIDALSHKDTEVCTTAA
AMLRNVLLVYDSFDAVAGLSATNAYAKEVLQSWADAEWFTSRPVLPEKMTLTVFKVPGET
NTDDLSPASEAFTRSDIPLHALCMLGSKMDDPIGTIAALKEKGHPLAYVGDVVGTGSSRK
SGINSVQWHLGEDIPAVPNKRTGSVIIGSIVAPIFFNTAEDSGALPIQADVSAMETGDVI
DVYPYEGKIEKDGEIISRFDLTPNTLTDEVRAGGRIPLIIGRTLTKKARTFLGMGEDSLF
INPLQPADSGKGYTLAQKMIGKACGLPGVRPGMYVEPETLTVGSQDTTGAMTRDEVKELA
ALSFSADLVMQSFCHTAAYPKPSDVKLHRTLPYFIMSRGGVSLRPGDGVIHTWLNRMVLP
DTLGTGGDSHTRFPIGVSFPGGSGLVAFAAVTGTMPLNVPESVLVRFSGTLQEGITLRDL
VNAIPYVAIRQGLLTVEKKGKKNIFAGRILEIEGLPQLKVEQAFELSDASAERSAAACTV
RLDKEPVIEYLSSNMKLLEQMIEEGYGNPETLRRRISRMQEWLDNPVLLQPDSDAEYAAV
IEIDLNTITEPVLACPNDPDDVMTLSEILLDENRPKKIDEVFVGSCMTNIGHFRALGEVL
RNKGVASARLWIVPPTKMDMKKLVEEGYYSVFGAAGARMEIPGCSLCMGNQARVADNAVV
FSTSTRNFDNRMGKGAKVYLGSAELAAVAALLGHLPNRDEYMEVVRKQLSGAREEEIYRY
LNFHELGKEDLQLLVD
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory