SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012466939.1 NCBI__GCF_000020465.1:WP_012466939.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
33% identity, 96% coverage: 3:93/95 of query aligns to 2:92/564 of 3al0C

query
sites
3al0C
V
 
V
T
 
T
R
 
K
D
 
D
D
 
L
V
 
V
A
 
L
Y
 
H
I
 
L
A
 
E
A
 
N
L
 
L
S
 
A
R
 
R
L
 
L
Q
 
E
F
 
L
S
 
S
D
 
E
E
 
D
E
 
Q
M
 
R
A
 
E
T
 
S
M
 
L
T
 
M
T
 
K
E
 
D
L
 
F
N
 
Q
S
 
E
I
 
I
L
 
L
H
 
D
Y
 
Y
V
 
V
E
 
E
K
 
L
L
 
L
N
 
N
E
 
E
I
 
V
D
 
D
T
 
V
D
 
E
G
 
G
V
 
V
E
 
E
P
 
P
L
 
M
S
 
Y
G
 
T
I
 
P
H
 
V
D
 
E
Q
 
D
M
 
S
N
 
A
V
 
K
L
 
L
R
 
R
D
 
K
D
 
G
V
 
D
E
 
P
K
 
R
E
 
F
S
 
F
I
 
E
A
 
M
T
 
R
A
 
D
L
 
L
A
 
I
L
 
K
Q
 
K
N
 
N
A
 
F
P
 
P
D
 
E
R
 
E
Q
 
K
D
 
D
R
 
G
F
 
H
F
 
I
K
 
K
V
 
V
P
 
P
K
 
G
V
 
I

Sites not aligning to the query:

Query Sequence

>WP_012466939.1 NCBI__GCF_000020465.1:WP_012466939.1
MSVTRDDVAYIAALSRLQFSDEEMATMTTELNSILHYVEKLNEIDTDGVEPLSGIHDQMN
VLRDDVEKESIATALALQNAPDRQDRFFKVPKVIG

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory