Comparing WP_012467010.1 NCBI__GCF_000020465.1:WP_012467010.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
57% identity, 98% coverage: 3:241/244 of query aligns to 1:240/240 of 6mjpA
6mbnA Lptb e163q in complex with atp (see paper)
55% identity, 98% coverage: 3:241/244 of query aligns to 2:241/241 of 6mbnA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
55% identity, 97% coverage: 3:239/244 of query aligns to 1:238/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
55% identity, 97% coverage: 3:239/244 of query aligns to 1:238/238 of 6s8gA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
55% identity, 96% coverage: 3:236/244 of query aligns to 1:235/235 of 6mhzA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
55% identity, 95% coverage: 3:235/244 of query aligns to 1:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
55% identity, 95% coverage: 3:235/244 of query aligns to 1:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
55% identity, 95% coverage: 3:234/244 of query aligns to 1:233/233 of 6b8bA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
33% identity, 95% coverage: 4:236/244 of query aligns to 6:238/240 of 1ji0A
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
35% identity, 91% coverage: 14:236/244 of query aligns to 12:242/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
35% identity, 91% coverage: 14:236/244 of query aligns to 12:242/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
35% identity, 91% coverage: 14:236/244 of query aligns to 10:240/253 of 6z5uK
3d31A Modbc from methanosarcina acetivorans (see paper)
35% identity, 84% coverage: 24:228/244 of query aligns to 20:219/348 of 3d31A
Sites not aligning to the query:
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 95% coverage: 5:237/244 of query aligns to 5:254/254 of 1g6hA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 92% coverage: 5:229/244 of query aligns to 18:240/378 of P69874
Sites not aligning to the query:
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 95% coverage: 5:236/244 of query aligns to 5:253/253 of 1g9xB
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
31% identity, 86% coverage: 20:228/244 of query aligns to 42:254/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
31% identity, 86% coverage: 20:228/244 of query aligns to 42:254/382 of 7aheC
Sites not aligning to the query:
7ch6C Cryo-em structure of e.Coli mlafeb with amppnp (see paper)
36% identity, 88% coverage: 17:231/244 of query aligns to 17:235/265 of 7ch6C
Sites not aligning to the query:
6xgyA Crystal structure of e. Coli mlafb abc transport subunits in the dimeric state (see paper)
36% identity, 88% coverage: 17:231/244 of query aligns to 17:235/264 of 6xgyA
Sites not aligning to the query:
>WP_012467010.1 NCBI__GCF_000020465.1:WP_012467010.1
MKSTLSCSGLKKIYNRREVVKSSTLEVKQGEIVGLLGPNGAGKTTTFYMIVGLVQPDGGK
VMLDGRDITTLPMHKRARLGIGYLPQEASVFRKMTVENNILSVLEFTSLSKTERHEKAEK
MLEDLNIANIRKSMGYALSGGERRRTEIARALALDPKFILLDEPFAGVDPIAVEDIQQIV
EELTKRNIGVLITDHNVHETLSITSHAYLLFDGSIFMQGSPQEIADNPEARKYYLGEKFS
LERY
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory