Comparing WP_012469705.1 NCBI__GCF_000020385.1:WP_012469705.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 8 hits to proteins with known functional sites (download)
5j6fA Crystal structure of dah7ps-cm complex from geobacillus sp. With prephenate (see paper)
32% identity, 85% coverage: 3:83/95 of query aligns to 4:84/352 of 5j6fA
Sites not aligning to the query:
P0A9J8 Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli (strain K12)
36% identity, 87% coverage: 7:89/95 of query aligns to 11:94/386 of P0A9J8
5gmuB Crystal structure of chorismate mutase like domain of bifunctional dahp synthase of bacillus subtilis in complex with chlorogenic acid (see paper)
29% identity, 74% coverage: 7:76/95 of query aligns to 9:78/87 of 5gmuB
Sites not aligning to the query:
1ecmB Atomic structure of the buried catalytic pocket of escherichia coli chorismate mutase
35% identity, 88% coverage: 7:90/95 of query aligns to 6:90/95 of 1ecmB
P39912 Protein AroA(G); EC 2.5.1.54; EC 5.4.99.5 from Bacillus subtilis (strain 168) (see paper)
27% identity, 81% coverage: 7:83/95 of query aligns to 10:86/358 of P39912
Sites not aligning to the query:
3nvtA 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7- phosphoheptulonate synthase/chorismate mutase (aroa) from listeria monocytogenes egd-e (see paper)
30% identity, 83% coverage: 5:83/95 of query aligns to 1:74/345 of 3nvtA
Sites not aligning to the query:
2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
29% identity, 84% coverage: 5:84/95 of query aligns to 7:95/104 of 2gtvX
3tfcA 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7- phosphoheptulonate synthase/chorismate mutase (aroa) from listeria monocytogenes egd-e in complex with phosphoenolpyruvate (see paper)
30% identity, 81% coverage: 7:83/95 of query aligns to 2:73/343 of 3tfcA
Sites not aligning to the query:
>WP_012469705.1 NCBI__GCF_000020385.1:WP_012469705.1
MNINETRMRIDLLDDVLLRIFNERARLALEIGHYKKLLDLPVYDPAREKKIFARMKSDNP
GPLDDGAIVRLFERVIDESRRLERIMTQQEGQEEC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory