Comparing WP_012471064.1 NCBI__GCF_000020385.1:WP_012471064.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P00861 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Escherichia coli (strain K12)
31% identity, 95% coverage: 9:425/439 of query aligns to 10:409/420 of P00861
1ko0A Crystal structure of a d,l-lysine complex of diaminopimelate decarboxylase
31% identity, 95% coverage: 9:425/439 of query aligns to 9:408/419 of 1ko0A
1knwA Crystal structure of diaminopimelate decarboxylase
31% identity, 95% coverage: 9:425/439 of query aligns to 9:408/421 of 1knwA
Q9X1K5 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)
24% identity, 93% coverage: 19:425/439 of query aligns to 7:375/386 of Q9X1K5
2yxxA Crystal structure analysis of diaminopimelate decarboxylate (lysa)
24% identity, 93% coverage: 19:425/439 of query aligns to 6:374/385 of 2yxxA
5x7mA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
28% identity, 95% coverage: 16:431/439 of query aligns to 32:440/443 of 5x7mA
5x7nA Crystal structure of meso-diaminopimelate decarboxylase (dapdc) from corynebacterium glutamicum (see paper)
28% identity, 95% coverage: 16:431/439 of query aligns to 32:440/442 of 5x7nA
4xg1B Psychromonas ingrahamii diaminopimelate decarboxylase with llp
28% identity, 95% coverage: 16:434/439 of query aligns to 16:413/418 of 4xg1B
B4XMC6 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Helicobacter pylori (Campylobacter pylori) (see paper)
28% identity, 93% coverage: 25:434/439 of query aligns to 13:398/405 of B4XMC6
3c5qA Crystal structure of diaminopimelate decarboxylase (i148l mutant) from helicobacter pylori complexed with l-lysine
28% identity, 93% coverage: 25:434/439 of query aligns to 11:390/394 of 3c5qA
P9WIU7 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see 2 papers)
27% identity, 94% coverage: 19:431/439 of query aligns to 34:443/447 of P9WIU7
1hkvA Mycobacterium diaminopimelate dicarboxylase (lysa) (see paper)
27% identity, 94% coverage: 19:431/439 of query aligns to 33:442/446 of 1hkvA
7ru7A Crystal structure of btrk, a decarboxylase involved in butirosin biosynthesis
25% identity, 97% coverage: 11:435/439 of query aligns to 3:411/412 of 7ru7A
4xg1A Psychromonas ingrahamii diaminopimelate decarboxylase with llp
27% identity, 90% coverage: 16:411/439 of query aligns to 14:366/393 of 4xg1A
1tufA Crystal structure of diaminopimelate decarboxylase from m. Jannaschi (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 24:428/434 of 1tufA
1twiA Crystal structure of diaminopimelate decarboxylase from m. Jannaschii in co-complex with l-lysine (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 24:428/434 of 1twiA
Q58497 Diaminopimelate decarboxylase; DAP decarboxylase; DAPDC; EC 4.1.1.20 from Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii) (see paper)
24% identity, 95% coverage: 19:435/439 of query aligns to 28:432/438 of Q58497
6n2aA Meso-diaminopimelate decarboxylase from arabidopsis thaliana (isoform 1)
22% identity, 91% coverage: 26:425/439 of query aligns to 31:410/422 of 6n2aA
6kniA Crystal structure of sbnh in complex with the cofactor plp, a plp- dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
24% identity, 82% coverage: 55:414/439 of query aligns to 46:381/381 of 6kniA
6knhC Crystal structure of sbnh in complex with citrate, a plp-dependent decarboxylase in staphyloferrin b biothesynthesis (see paper)
25% identity, 88% coverage: 28:413/439 of query aligns to 20:384/384 of 6knhC
>WP_012471064.1 NCBI__GCF_000020385.1:WP_012471064.1
MTIKQFGPTKLDAALIPVIARQWGTPIYLHDQEYIENSCEQLLNMPNAFGLHVRYAMKAN
SDRTVLRVVTGKGLDLDCSSLDEAARAHAAGIPFSRMMLTTQEVPGGDERAELEAMIKAG
LKYNVCSMLQFNLIADFAKANRIDLSMRVHPGAAGGGESATRDTGSEYSCFGVHLNDVPK
VKAMADEKGLRFTQVHVHIGSGGDPEKWRQNIDRELGFVKTYFPDATTVSFGGGLKVARM
PGEKQADIASLGAYAKQRIEEFKAETGRELQMEIEPGTFVVANSGHIITRIIDKKLTNEL
NFLIVDGGMELLTRPLLYGSEHPVSIVRQDGTLLSSEYDQAPAQGLKSFGIVGRCCESGD
SVRLDNDGNIVPVLIAEPEIGDYVVIGGTGAYSESMSPENYNSHRKPGAVMKTKSGELVQ
IRKKQVREQLTQNELDVTL
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory