SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012471222.1 NCBI__GCF_000020385.1:WP_012471222.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
29% identity, 88% coverage: 10:93/95 of query aligns to 9:92/564 of 3al0C

query
sites
3al0C
H
 
H
V
 
L
A
 
E
K
 
N
L
 
L
A
 
A
R
 
R
L
 
L
T
 
E
L
 
L
R
 
S
D
 
E
D
 
D
E
 
Q
K
 
R
Q
 
E
L
 
S
F
 
L
T
 
M
G
 
K
Q
 
D
M
 
F
E
 
Q
A
 
E
I
 
I
L
 
L
A
 
D
Y
 
Y
V
 
V
E
 
E
T
 
L
L
 
L
N
 
N
E
 
E
L
 
V
N
 
D
T
 
V
D
 
E
D
 
G
I
 
V
A
 
E
P
 
P
T
 
M
S
 
Y
H
 
-
A
 
-
V
 
T
P
 
P
M
 
V
E
 
E
N
 
D
A
 
S
F
 
A
R
 
K
P
 
L
D
 
R
C
 
K
V
 
G
A
 
D
P
 
P
S
 
R
I
 
F
G
 
F
H
 
E
D
 
M
R
 
R
A
 
D
L
 
L
-
 
I
-
 
K
A
 
K
N
 
N
A
 
F
P
 
P
D
 
E
K
 
E
N
 
K
E
 
D
T
 
G
Y
 
H
F
 
I
R
 
K
V
 
V
P
 
P
P
 
G
V
 
I

Sites not aligning to the query:

Query Sequence

>WP_012471222.1 NCBI__GCF_000020385.1:WP_012471222.1
MSINQHEIEHVAKLARLTLRDDEKQLFTGQMEAILAYVETLNELNTDDIAPTSHAVPMEN
AFRPDCVAPSIGHDRALANAPDKNETYFRVPPVIE

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory