SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_012505621.1 NCBI__GCF_000020625.1:WP_012505621.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 20 (the maximum) hits to proteins with known functional sites (download)

A8B2U2 Fructose-bisphosphate aldolase; Glfba; glFBPA; Fructose-1,6-bisphosphate aldolase; EC 4.1.2.13 from Giardia intestinalis (strain ATCC 50803 / WB clone C6) (Giardia lamblia) (see 4 papers)
48% identity, 97% coverage: 11:324/324 of query aligns to 1:307/323 of A8B2U2

query
sites
A8B2U2

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S50 (= S60) binding beta-D-fructose 1,6-bisphosphate
D83 (= D97) active site, Proton donor; mutation to A: Severe loss of catalytic activity.
H84 (= H98) binding Zn(2+)
H178 (= H193) binding beta-D-fructose 1,6-bisphosphate; binding Zn(2+)
G179 (= G194) binding beta-D-fructose 1,6-bisphosphate
K182 (= K197) binding beta-D-fructose 1,6-bisphosphate
H210 (= H226) binding Zn(2+)
G211 (= G227) binding beta-D-fructose 1,6-bisphosphate
S213 (= S229) binding beta-D-fructose 1,6-bisphosphate
N253 (= N269) binding beta-D-fructose 1,6-bisphosphate
D255 (= D271) binding beta-D-fructose 1,6-bisphosphate; mutation to A: 9.4-fold reduction in substrate affinity and 50-fold reduction in catalytic affinity. Has some activity towards tagatose-1,6-bisphosphate.
S256 (= S272) binding beta-D-fructose 1,6-bisphosphate
R259 (= R275) binding beta-D-fructose 1,6-bisphosphate; mutation to A: 1.8-fold reduction in substrate affinity and 2.8-fold reduction in catalytic efficiency. 6-fold reduction in substrate affinity and 24-fold reduction in catalytic efficiency; when associated with A-278.
D278 (= D294) mutation to A: 159-fold reduction in substrate affinity and 2770-fold reduction in catalytic efficiency. 6-fold reduction in substrate affinity and 24-fold reduction in catalytic efficiency; when associated with A-259.
R280 (= R296) binding beta-D-fructose 1,6-bisphosphate

3ohiA Structure of giardia fructose-1,6-biphosphate aldolase in complex with 3-hydroxy-2-pyridone (see paper)
48% identity, 96% coverage: 13:324/324 of query aligns to 2:303/319 of 3ohiA

query
sites
3ohiA

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binding ({3-hydroxy-2-oxo-4-[2-(phosphonooxy)ethyl]pyridin-1(2H)-yl}methyl)phosphonic acid: S49 (= S60), D82 (= D97), H83 (= H98), H174 (= H193), G175 (= G194), K178 (= K197), G207 (= G227), S209 (= S229), N249 (= N269), D251 (= D271), S252 (= S272), R255 (= R275)
binding zinc ion: H83 (= H98), H174 (= H193), H206 (= H226)

3gayA Structure of giardia fructose-1,6-biphosphate aldolase in complex with tagatose-1,6-biphosphate (see paper)
48% identity, 96% coverage: 13:324/324 of query aligns to 2:303/319 of 3gayA

query
sites
3gayA

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binding 1,6-di-O-phosphono-D-tagatose: N23 (= N34), S49 (= S60), D82 (= D97), H174 (= H193), G175 (= G194), K178 (= K197), H206 (= H226), G207 (= G227), S209 (= S229), N249 (= N269), D251 (= D271), S252 (= S272), R255 (= R275)
binding zinc ion: H83 (= H98), H174 (= H193), H206 (= H226)

3gb6A Structure of giardia fructose-1,6-biphosphate aldolase d83a mutant in complex with fructose-1,6-bisphosphate (see paper)
47% identity, 96% coverage: 13:324/324 of query aligns to 2:302/318 of 3gb6A

query
sites
3gb6A

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L

V

V

K

K

D

T

M

I

I

N

N

E

K

H

Y

G

G

K

K

L

M

K

P

D

D

A

A

I

V

G

G

I

V

S

P

E

I

E

E

Q

S

L

I

R

V

K

H

A

A

A

I

Q

G

S

E

A

G

V

V

C

C

K

K

I

I

N
|
N

I

V

D
|
D

S
|
S

D

D

G

S

R
|
R

L

M

A

A

M

M

T

T

A

G

A

A

I

I

R

R

K

K

V

V

L

F

D

V

E

E

K

H

P

P

E

E

E

K

F

F

D

D

P

P

R

R

K

D

Y

Y

L

L

G

G

P

P

A

G

R

R

D

D

A

A

L

I

K

T

E

E

L

M

Y

L

K

I

H

P

K

K

N

-

I

I

N

K

V

A

L

F

G

G

S

S

N

A

D

G

K

H

A

A

binding 1,6-di-O-phosphono-D-fructose: N23 (= N34), S49 (= S60), H173 (= H193), G174 (= G194), K177 (= K197), H205 (= H226), G206 (= G227), S208 (= S229), N248 (= N269), D250 (= D271), S251 (= S272), R254 (= R275)

2isvB Structure of giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate (see paper)
46% identity, 96% coverage: 13:324/324 of query aligns to 2:292/307 of 2isvB

query
sites
2isvB

L

L

Q

C

N

T

S

L

K

R

E

Q

L

M

F

L

A

G

K

E

A

A

V

R

K

K

G

H

G

K

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

V

N

N

L

M

E

E

Q

Q

L

I

Q

Q

A

G

I

I

I

M

M

K

A

A

C

V

V

V

E

Q

T

L

N

K

S

S

P

P

V

V

I

I

L

L

Q

Q

V

C

S

S

K

R

G

G

A

A

R

L

N

K

Y

Y

A

S

N

D

Q

M

T

I

L

Y

L

L

R

K

N

K

L

L

A

C

R

E

G

A

A

A

V

L

E

E

Y

K

A

H

A

P

E

D

L

-

G

-

N

-

P

-

V

I

P

P

I

I

V

C

L

I

H

H

L

L

D
|
D

H
|
H

G

G

D

D

S

T

F

L

E

E

L

S

C

V

K

K

D

M

C

A

I

I

Q

D

T

L

G

G

F

F

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

P

Y

F

E

D

D

E

N

N

V

V

T

R

L

I

T

T

R

K

Q

E

V

V

D

A

Y

Y

A

A

H

H

Q

A

Y

R

D

S

V

V

T

S

V

V

E

E

G

A

E

E

L

L

G

G

V

-

L

-

A

-

G

-

V

-

E

-

D

-

E

-

V

-

A

-

S

Q

E

N

T

T

H

V

T

Q

Y

L

T

T

Q

E

P

P

E

Q

E

D

V

A

E

K

D

K

F

F

V

V

T

E

R

L

T

T

G

G

V

V

D

D

S

A

L

L

A

A

I

V

A

A

I

I

G

G

T

T

S

S

H
|
H

G
|
G

A

A

F

Y

K
|
K

F

F

K

I

P

-

G

-

E

-

D

-

H

-

K

R

I

L

R

A

L

I

D

D

I

R

L

V

S

K

E

T

I

I

E

S

K

D

R

-

I

L

P

T

G

G

F

I

P

P

I

L

V

V

L

M

H
|
H

G
|
G

S

S

S
|
S

S

S

V

V

P

P

Q

K

D

D

L

V

V

K

K

D

T

M

I

I

N

N

E

K

H

Y

G

G

K

K

L

M

K

P

D

D

A

A

I

V

G

G

I

V

S

P

E

I

E

E

Q

S

L

I

R

V

K

H

A

A

A

I

Q

G

S

E

A

G

V

V

C

C

K

K

I

I

N
|
N

I

V

D
|
D

S
|
S

D

D

G

S

R

R

L

M

A

A

M

M

T

T

A

G

A

A

I

I

R

R

K

K

V

V

L

F

D

V

E

E

K

H

P

P

E

E

E

K

F

F

D

D

P

P

R

R

K

D

Y

Y

L

L

G

G

P

P

A

G

R

R

D

D

A

A

L

I

K

T

E

E

L

M

Y

L

K

I

H

P

K

K

N

-

I

I

N

K

V

A

L

F

G

G

S

S

N

A

D

G

K

H

A

A

binding phosphoglycolohydroxamic acid: D82 (= D97), H168 (= H193), G169 (= G194), K172 (= K197), H195 (= H226), G196 (= G227), S198 (= S229), N238 (= N269), D240 (= D271), S241 (= S272)
binding zinc ion: H83 (= H98), H168 (= H193), H195 (= H226)

2isvA Structure of giardia fructose-1,6-biphosphate aldolase in complex with phosphoglycolohydroxamate (see paper)
45% identity, 96% coverage: 13:324/324 of query aligns to 2:283/298 of 2isvA

query
sites
2isvA

L

L

Q

C

N

T

S

L

K

R

E

Q

L

M

F

L

A

G

K

E

A

A

V

R

K

K

G

H

G

K

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

V

N

N

L

M

E

E

Q

Q

L

I

Q

Q

A

G

I

I

I

M

M

K

A

A

C

V

V

V

E

Q

T

L

N

K

S

S

P

P

V

V

I

I

L

L

Q

Q

V

C

S

S

K

R

G

G

A

A

R

L

N

K

Y

Y

A

S

N

D

Q

M

T

I

L

Y

L

L

R

K

N

K

L

L

A

C

R

E

G

A

A

A

V

L

E

E

Y

K

A

H

A

P

E

D

L

-

G

-

N

-

P

-

V

I

P

P

I

I

V

C

L

I

H

H

L

L

D
|
D

H
|
H

G

G

D

D

S

T

F

L

E

E

L

S

C

V

K

K

D

M

C

A

I

I

Q

D

T

L

G

G

F

F

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

P

Y

F

E

D

D

E

N

N

V

V

T

R

L

I

T

T

R

K

Q

E

V

V

D

A

Y

Y

A

A

H

H

Q

A

Y

R

D

S

V

V

T

S

V

V

E

E

G

A

E

E

L

L

G

G

V

L

L

-

A

-

G

-

V

-

E

-

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

-

Y

-

T

T

Q

E

P

P

E

Q

E

D

V

A

E

K

D

K

F

F

V

V

T

E

R

L

T

T

G

G

V

V

D

D

S

A

L

L

A

A

I

V

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

-

K

-

F

-

K

-

P

-

G

-

E

-

D

-

H

-

K

R

I

L

R

A

L

I

D

D

I

R

L

V

S

K

E

T

I

I

E

S

K

D

R

-

I

L

P

T

G

G

F

I

P

P

I

L

V

V

L

M

H
|
H

G
|
G

S

S

S
|
S

S

S

V

V

P

P

Q

K

D

D

L

V

V

K

K

D

T

M

I

I

N

N

E

K

H

Y

G

G

K

K

L

M

K

P

D

D

A

A

I

V

G

G

I

V

S

P

E

I

E

E

Q

S

L

I

R

V

K

H

A

A

A

I

Q

G

S

E

A

G

V

V

C

C

K

K

I

I

N
|
N

I

V

D
|
D

S
|
S

D

D

G

S

R

R

L

M

A

A

M

M

T

T

A

G

A

A

I

I

R

R

K

K

V

V

L

F

D

V

E

E

K

H

P

P

E

E

E

K

F

F

D

D

P

P

R

R

K

D

Y

Y

L

L

G

G

P

P

A

G

R

R

D

D

A

A

L

I

K

T

E

E

L

M

Y

L

K

I

H

P

K

K

N

-

I

I

N

K

V

A

L

F

G

G

S

S

N

A

D

G

K

H

A

A

binding phosphoglycolohydroxamic acid: D82 (= D97), H163 (= H193), H186 (= H226), G187 (= G227), S189 (= S229), N229 (= N269), D231 (= D271), S232 (= S272)
binding zinc ion: H83 (= H98), H163 (= H193), H186 (= H226)

1rv8B Class ii fructose-1,6-bisphosphate aldolase from thermus aquaticus in complex with cobalt (see paper)
48% identity, 95% coverage: 18:324/324 of query aligns to 7:305/305 of 1rv8B

query
sites
1rv8B

E

E

L

I

F

L

A

K

K

K

A

A

V

R

K

E

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

V

N

N

L

M

E

E

Q

F

L

L

Q

Q

A

A

I

V

I

L

M

E

A

A

C

A

V

E

E

E

T

Q

N

R

S

S

P

P

V

V

I

I

L

L

Q

A

V

L

S

S

K

E

G

G

A

A

R

M

N

K

Y

Y

A

G

N

G

Q

-

T

-

L

-

R

R

N

A

L

L

A

T

R

L

G

M

A

A

V

V

E

E

Y

L

A

A

A

K

E

E

L

-

G

-

N

A

P

R

V

V

P

P

I

V

V

A

L

V

H

H

L

L

D
|
D

H
|
H

G

G

D

S

S

S

F

Y

E

E

L

S

C

V

K

L

D

R

C

A

I

L

Q

R

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

K

S

S

H

H

L

E

S

D

Y

F

E

E

D

T

N

N

V

V

T

R

L

E

T

T

R
|
R

Q

R

V

V

D

E

Y

A

A

A

H
|
H

Q

A

Y

V

D

G

V

V

T

T

V

V

E

E

G

A

E
|
E

L

L

G

G

V

R

L

L

A

A

G

G

V

I

E
|
E

D

E

E

H

V

V

A

A

S

V

E

D

T

E

H

K

-

D

-

A

T

L

Y

L

T

T

Q

N

P

P

E

E

V

A

E

R

D

I

F

F

V

M

T

E

R

R

T

T

G

G

V

A

D

D

S

Y

L

L

A

A

I

V

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

Y

K

K

F

G

K

K

-

G

-

R

P

P

G

F

E

I

D

D

H

H

K

A

I

R

R

-

L

-

D

-

I

-

L

L

S

E

E

R

I

I

E

A

K

R

R

L

I

V

P

P

G

A

F

-

P

P

I

L

V

V

L

L

H
|
H

G

G

S

A

S
|
S

S

A

V

V

P

P

Q

P

D

E

L

L

V

V

K

E

T

R

I

F

N

R

E

A

H

S

G

G

K

E

L

I

K

G

D

E

A

A

I

A

G

G

I

I

S

H

E

P

E

E

Q

D

L

I

R

K

K

K

A

A

A

I

Q

S

S

L

A

G

V

I

C

A

K

K

I

I

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R

R

L

L

A

A

M

F

T

T

A

A

A

L

I

I

R

R

K

E

V

A

L

L

D

N

E

K

K

N

P

P

E

K

E

E

F

F

D

D

P

P

R

R

K

K

Y

Y

L

L

G

G

P

P

A

A

R

R

D

E

A

A

L

V

K

K

E

E

L

V

Y

V

K

K

H

S

K

R

N

-

I

M

N

E

V

L

L

F

G

G

S

S

N

V

D

G

K

R

A

A

active site: D80 (= D97), H81 (= H98), E140 (= E157), H178 (= H193), H208 (= H226), N251 (= N269)
binding cobalt (ii) ion: H81 (= H98), E132 (= E149), H178 (= H193), H208 (= H226)
binding sulfate ion: R116 (= R133), H123 (= H140), S211 (= S229), D253 (= D271), T254 (≠ S272)

3n9sA Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(4-hydroxybutyl)- glycolohydroxamic acid bis- phosphate, a competitive inhibitor (see paper)
43% identity, 96% coverage: 13:323/324 of query aligns to 2:306/307 of 3n9sA

query
sites
3n9sA

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N
|
N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S
|
S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A
x
C

E
|
E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D
|
D

G

A

S
|
S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E
|
E

L

L

G
|
G

V

R

L

L

A

M

G

G

V

I

E

E

D

D

E

N

V

I

A

S

S

V

E

D

T

E

H

K

-

D

-

A

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G
|
G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H
x
A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R

R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

active site: C69 (≠ A84), E70 (= E85), G136 (= G151), H180 (= H193), A226 (≠ H242), N253 (= N269)
binding calcium ion: D104 (= D119), S106 (= S121), E134 (= E149)
binding 4-{hydroxy[(phosphonooxy)acetyl]amino}butyl dihydrogen phosphate: N23 (= N34), S49 (= S60), D82 (= D97), H83 (= H98), H180 (= H193), G181 (= G194), K184 (= K197), H210 (= H226), G211 (= G227), S213 (= S229), N253 (= N269), D255 (= D271), T256 (≠ S272)
binding zinc ion: H83 (= H98), H180 (= H193), H210 (= H226)

3n9rA Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(4-hydroxybutyl)-phosphoglycolohydroxamic acid, a competitive inhibitor (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:296/297 of 3n9rA

query
sites
3n9rA

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S

S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A
x
C

E
|
E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D

D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E

E

L

L

G
|
G

V

R

L

L

A

M

G

G

V

I

E

A

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G
|
G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H
x
A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R

R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

active site: C69 (≠ A84), E70 (= E85), G136 (= G151), H170 (= H193), A216 (≠ H242), N243 (= N269)
binding 2-[hydroxy(4-hydroxybutyl)amino]-2-oxoethyl dihydrogen phosphate: H83 (= H98), H170 (= H193), G171 (= G194), K174 (= K197), H200 (= H226), G201 (= G227), S203 (= S229), N243 (= N269), D245 (= D271), T246 (≠ S272)
binding zinc ion: H83 (= H98), H170 (= H193), H200 (= H226)

3c56A Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with n-(3-hydroxypropyl)-glycolohydroxamic acid bisphosphate, a competitive inhibitor (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:296/297 of 3c56A

query
sites
3c56A

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N
|
N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S
|
S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A
x
C

E
|
E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E

E

L

L

G
|
G

V

R

L

L

A

M

G

G

V

I

E

A

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H
x
A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R
|
R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

active site: C69 (≠ A84), E70 (= E85), G136 (= G151), H170 (= H193), A216 (≠ H242), N243 (= N269)
binding 3-{hydroxy[(phosphonooxy)acetyl]amino}propyl dihydrogen phosphate: N23 (= N34), S49 (= S60), D82 (= D97), H170 (= H193), K174 (= K197), G201 (= G227), S203 (= S229), N243 (= N269), D245 (= D271), T246 (≠ S272), R249 (= R275)
binding zinc ion: H83 (= H98), H170 (= H193), H200 (= H226)

3c52A Class ii fructose-1,6-bisphosphate aldolase from helicobacter pylori in complex with phosphoglycolohydroxamic acid, a competitive inhibitor (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:295/296 of 3c52A

query
sites
3c52A

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S

S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A
x
C

E
|
E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D
|
D

G

A

S
|
S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E
|
E

L

L

G
|
G

V

R

L

L

A

M

G

G

V

I

E

-

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H
x
A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R

R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

active site: C69 (≠ A84), E70 (= E85), G136 (= G151), H169 (= H193), A215 (≠ H242), N242 (= N269)
binding calcium ion: D104 (= D119), S106 (= S121), E134 (= E149)
binding phosphoglycolohydroxamic acid: D82 (= D97), H83 (= H98), H169 (= H193), K173 (= K197), H199 (= H226), G200 (= G227), S202 (= S229), N242 (= N269), D244 (= D271), T245 (≠ S272)
binding zinc ion: H83 (= H98), H169 (= H193), H199 (= H226)

5uckA Class ii fructose-1,6-bisphosphate aldolase of helicobacter pylori with cleavage products (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:290/291 of 5uckA

query
sites
5uckA

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S
|
S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A

C

E

E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E
|
E

L

L

G

G

V

R

L

L

A

-

G

-

V

-

E

-

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

-

Y

-

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

F

K

K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G

G

S

A

S

S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H

A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N

N

I

T

D
|
D

S

T

D

D

G

L

R
|
R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

binding glyceraldehyde-3-phosphate: S49 (= S60), D82 (= D97), H83 (= H98), H164 (= H193), D239 (= D271), R243 (= R275)
binding zinc ion: H83 (= H98), H83 (= H98), E134 (= E149), H164 (= H193), H194 (= H226), H194 (= H226)

5ucpA Class ii fructose-1,6-bisphosphate aldolase e142a variant of helicobacter pylori with fbp and cleavage products (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:291/292 of 5ucpA

query
sites
5ucpA

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S
|
S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A

C

E

E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E
|
E

L

L

G

G

V

-

L

-

A

-

G

-

V

-

E

-

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

R

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
|
H

G

G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H

A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R
|
R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K

H

E

K

R

N

-

I

M

N

K

V

L

L

L

G

G

S

S

N

A

D

N

K

K

binding 1,6-di-O-phosphono-D-fructose: S49 (= S60), D82 (= D97), H83 (= H98), H165 (= H193), K169 (= K197), G196 (= G227), S198 (= S229), N238 (= N269), D240 (= D271), T241 (≠ S272), R244 (= R275)
binding zinc ion: H83 (= H98), H83 (= H98), H83 (= H98), E134 (= E149), H165 (= H193), H165 (= H193), H165 (= H193), H195 (= H226), H195 (= H226)

5ud4A Class ii fructose-1,6-bisphosphate aldolase h180q variant of helicobacter pylori with tbp (see paper)
42% identity, 96% coverage: 13:323/324 of query aligns to 2:292/293 of 5ud4A

query
sites
5ud4A

L

L

Q

V

N

K

S

G

K

N

E

E

L

I

F

L

A

L

K

K

A

A

V

H

K

K

G

E

G

G

Y

Y

A

G

I

V

P

G

A

A

Y

F

N

N

F

F

N

V

N

N

L

F

E

E

Q

M

L

L

Q

N

A

A

I

I

I

F

M

E

A

A

C

G

V

N

E

E

T

E

N

N

S

S

P

P

V

L

I

F

L

I

Q

Q

V

A

S
|
S

K

E

G

G

A

A

R

I

N

K

Y

Y

A

M

N

G

Q

I

T

-

L

-

R

-

N

D

L

M

A

A

R

V

G

G

A

M

V

V

E

K

Y

I

A

M

A

C

E

E

L

R

G

Y

N

P

P

H

V

I

P

P

I

V

V

A

L

L

H

H

L

L

D
|
D

H
|
H

G

G

D

T

S

T

F

F

E

E

L

S

C

C

K

E

D

K

C

A

I

V

Q

K

T

A

G

G

F

F

S

T

S

S

V

V

M

M

I

I

D

D

G

A

S

S

H

H

L

H

S

A

Y

F

E

E

D

E

N

N

V

L

T

E

L

L

T

T

R

S

Q

K

V

V

D

K

Y

M

A

A

H

H

Q

N

Y

A

D

G

V

V

T

S

V

V

E

E

G

A

E
|
E

L

L

G

G

V

R

L

L

A

-

G

-

V

-

E

-

D

-

E

-

V

-

A

-

S

-

E

-

T

-

H

-

T

V

Y

L

T

V

Q

N

P

P

E

K

E

E

V

A

E

E

D

Q

F

F

V

V

T

K

R

E

T

S

G

Q

V

V

D

D

S

Y

L

L

A

A

I

P

A

A

I

I

G

G

T

T

S

S

H
x
Q

G
|
G

A

A

F

F

K
|
K

F

F

K

K

P

-

G

G

E

E

D

P

H

-

K

K

I

L

R

D

L

F

D

E

I

R

L

L

S

Q

E

E

I

V

E

-

K

K

R

R

I

L

P

T

G

N

F

I

P

P

I

L

V

V

L

L

H
|
H

G
|
G

S

A

S
|
S

S

A

V

I

P

P

Q

D

D

N

L

V

V

R

K

K

T

S

I

Y

N

L

E

D

H

A

G

G

K

D

L

L

K

K

D

G

A

S

I

K

G

G

I

V

S

P

E

F

E

E

Q

F

L

L

R

Q

K

E

A

S

A

V

Q

K

S

G

A

G

V

I

C

N

K

K

I

V

N
|
N

I

T

D
|
D

S
x
T

D

D

G

L

R
|
R

L

I

A

A

M

F

T

I

A

A

A

E

I

V

R

R

K

K

V

V

L

A

D

N

E

E

K

D

P

K

E

S

E

Q

F

F

D

D

P

L

R

R

K

K

Y

F

L

F

G

S

P

P

A

A

R

Q

D

L

A

A

L

L

K

K

E

N

L

V

Y

V

K

K