SitesBLAST
Comparing WP_012536420.1 NCBI__GCF_000021485.1:WP_012536420.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
3dc2A Crystal structure of serine bound d-3-phosphoglycerate dehydrogenase from mycobacterium tuberculosis (see paper)
42% identity, 96% coverage: 1:507/527 of query aligns to 1:505/526 of 3dc2A
- active site: N96 (= N97), R230 (= R231), D254 (= D255), E259 (= E260), H277 (= H279)
- binding serine: Y458 (≠ N460), D460 (= D462), R461 (≠ E463), P462 (= P464), G463 (= G465), A464 (≠ L466), L465 (≠ I467), L484 (= L486)
3ddnB Crystal structure of hydroxypyruvic acid phosphate bound d-3- phosphoglycerate dehydrogenase in mycobacterium tuberculosis (see paper)
43% identity, 96% coverage: 1:507/527 of query aligns to 2:504/525 of 3ddnB
O43175 D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; Malate dehydrogenase; EC 1.1.1.95; EC 1.1.1.399; EC 1.1.1.37 from Homo sapiens (Human) (see 3 papers)
43% identity, 77% coverage: 4:407/527 of query aligns to 9:412/533 of O43175
- T78 (≠ I73) binding NAD(+)
- R135 (≠ K130) to W: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606949
- RI 155:156 (≠ NI 150:151) binding NAD(+)
- D175 (= D170) binding NAD(+)
- T207 (= T202) binding NAD(+)
- CAR 234:236 (≠ AAR 229:231) binding NAD(+)
- D260 (= D255) binding NAD(+)
- V261 (= V256) to M: in PHGDHD; results in a four-fold decrease in substrate affinity and a slight increase in maximal enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs267606947
- HLGA 283:286 (= HLGA 279:282) binding NAD(+)
- A373 (= A369) to T: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs201553627
- G377 (= G373) to S: in PHGDHD; results in a 2-fold decrease in enzyme activity with 3-phosphohydroxypyruvate, but no change in substrate affinity; dbSNP:rs267606948
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
- 2 modified: N-acetylalanine
- 425 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907988
- 490 V → M: in PHGDHD; results in almost undetectable enzyme activity with 3-phosphohydroxypyruvate; dbSNP:rs121907987
7dkmA Phgdh covalently linked to oridonin (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 5:299/306 of 7dkmA
- binding nicotinamide-adenine-dinucleotide: T74 (≠ I73), A102 (≠ T101), G148 (= G147), R151 (≠ N150), I152 (= I151), Y170 (= Y169), D171 (= D170), P172 (= P171), I173 (≠ Y172), H202 (= H201), T203 (= T202), P204 (= P203), T209 (= T208), C230 (≠ A229), A231 (= A230), R232 (= R231), H279 (= H279), G281 (= G281)
- binding (1beta,6beta,7beta,8alpha,9beta,10alpha,13alpha,14R,16beta)-1,6,7,14-tetrahydroxy-7,20-epoxykauran-15-one: C14 (≠ R13), K17 (≠ E16), I18 (= I17), E293 (≠ I293)
6rj3A Crystal structure of phgdh in complex with compound 15 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 3:297/297 of 6rj3A
6cwaA Crystal structure phgdh in complex with nadh and 3-phosphoglycerate at 1.77 a resolution (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 3:297/299 of 6cwaA
- binding 1,4-dihydronicotinamide adenine dinucleotide: N96 (= N97), A100 (≠ T101), R149 (≠ N150), I150 (= I151), Y168 (= Y169), D169 (= D170), P170 (= P171), I171 (≠ Y172), H200 (= H201), T201 (= T202), P202 (= P203), T207 (= T208), C228 (≠ A229), A229 (= A230), R230 (= R231), H277 (= H279), G279 (= G281)
7ewhA Crystal structure of human phgdh in complex with homoharringtonine (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 4:298/302 of 7ewhA
- binding (3beta)-O~3~-[(2R)-2,6-dihydroxy-2-(2-methoxy-2-oxoethyl)-6-methylheptanoyl]cephalotaxine: L146 (≠ I146), G147 (= G147), L148 (≠ T148), G149 (= G149), R150 (≠ N150), I151 (= I151), G152 (= G152), D170 (= D170), H201 (= H201), T202 (= T202), P203 (= P203)
6rihA Crystal structure of phgdh in complex with compound 9 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 4:298/302 of 6rihA
6plgA Crystal structure of human phgdh complexed with compound 15 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 4:298/303 of 6plgA
6plfA Crystal structure of human phgdh complexed with compound 1 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 5:299/305 of 6plfA
6rj5A Crystal structure of phgdh in complex with compound 39 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 4:298/301 of 6rj5A
6rj2A Crystal structure of phgdh in complex with compound 40 (see paper)
48% identity, 56% coverage: 4:299/527 of query aligns to 1:295/299 of 6rj2A
- binding ~{N}-[(1~{R})-1-[4-(ethanoylsulfamoyl)phenyl]ethyl]-2-methyl-5-phenyl-pyrazole-3-carboxamide: G146 (= G149), I148 (= I151), Y166 (= Y169), D167 (= D170), P168 (= P171), I169 (≠ Y172), I170 (≠ L173), H198 (= H201), T199 (= T202), L208 (= L211), R228 (= R231)
6plfB Crystal structure of human phgdh complexed with compound 1 (see paper)
47% identity, 56% coverage: 4:299/527 of query aligns to 3:289/292 of 6plfB
- binding 4-{(1S)-1-[(5-chloro-6-{[(5S)-2-oxo-1,3-oxazolidin-5-yl]methoxy}-1H-indole-2-carbonyl)amino]-2-hydroxyethyl}benzoic acid: R141 (≠ N150), Y160 (= Y169), D161 (= D170), P162 (= P171), I164 (≠ L173), L179 (≠ M188), T193 (= T202), P194 (= P203), S198 (≠ A207), L202 (= L211)
1wwkA Crystal structure of phosphoglycerate dehydrogenase from pyrococcus horikoshii ot3
39% identity, 57% coverage: 4:306/527 of query aligns to 3:304/304 of 1wwkA
- active site: S96 (≠ N97), R230 (= R231), D254 (= D255), E259 (= E260), H278 (= H279)
- binding nicotinamide-adenine-dinucleotide: V100 (≠ T101), G146 (= G147), F147 (≠ T148), G148 (= G149), R149 (≠ N150), I150 (= I151), Y168 (= Y169), D169 (= D170), P170 (= P171), V201 (≠ T202), P202 (= P203), T207 (= T208), T228 (≠ A229), S229 (≠ A230), D254 (= D255), H278 (= H279), G280 (= G281)
7cvpA The crystal structure of human phgdh from biortus.
45% identity, 49% coverage: 44:299/527 of query aligns to 23:252/254 of 7cvpA
- binding nicotinamide-adenine-dinucleotide: G101 (= G147), G103 (= G149), R104 (≠ N150), I105 (= I151), Y123 (= Y169), D124 (= D170), P125 (= P171), I126 (≠ Y172), H155 (= H201), T156 (= T202), P157 (= P203), T162 (= T208), C183 (≠ A229), A184 (= A230), R185 (= R231), H232 (= H279), G234 (= G281)
P87228 Putative D-3-phosphoglycerate dehydrogenase; 3-PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
36% identity, 60% coverage: 4:317/527 of query aligns to 58:382/466 of P87228
- S87 (≠ G32) modified: Phosphoserine
- S258 (≠ T205) modified: Phosphoserine
5aovA Ternary crystal structure of pyrococcus furiosus glyoxylate hydroxypyruvate reductase in presence of glyoxylate (see paper)
37% identity, 51% coverage: 33:302/527 of query aligns to 36:311/334 of 5aovA
- active site: L100 (≠ N97), R241 (= R231), D265 (= D255), E270 (= E260), H288 (= H279)
- binding glyoxylic acid: M52 (≠ R49), L53 (≠ S50), L53 (≠ S50), Y74 (≠ A71), A75 (≠ G72), V76 (≠ I73), G77 (= G74), R241 (= R231), H288 (= H279)
- binding nadp nicotinamide-adenine-dinucleotide phosphate: V76 (≠ I73), T104 (= T101), F158 (≠ T148), G159 (= G149), R160 (≠ N150), I161 (= I151), S180 (≠ D170), R181 (≠ P171), A211 (≠ H201), V212 (≠ T202), P213 (= P203), T218 (= T208), I239 (≠ A229), A240 (= A230), R241 (= R231), H288 (= H279), G290 (= G281)
2p9eA Crystal structure of g336v mutant of e.Coli phosphoglycerate dehydrogenase (see paper)
36% identity, 59% coverage: 8:317/527 of query aligns to 5:326/406 of 2p9eA
- active site: N104 (= N97), R236 (= R231), D260 (= D255), E265 (= E260), H288 (= H279)
- binding 1,4-dihydronicotinamide adenine dinucleotide: G156 (= G149), H157 (≠ N150), I158 (= I151), Y176 (= Y169), D177 (= D170), I178 (≠ Y172), H206 (= H201), V207 (≠ T202), P208 (= P203), S212 (≠ A207), A234 (= A229), S235 (≠ A230), R236 (= R231), H288 (= H279), G290 (= G281)
P0A9T0 D-3-phosphoglycerate dehydrogenase; PGDH; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Escherichia coli (strain K12) (see 2 papers)
36% identity, 59% coverage: 8:317/527 of query aligns to 9:330/410 of P0A9T0
Sites not aligning to the query:
- 1 modified: Initiator methionine, Removed
1ybaA The active form of phosphoglycerate dehydrogenase (see paper)
36% identity, 59% coverage: 8:317/527 of query aligns to 5:326/406 of 1ybaA
- active site: N104 (= N97), R236 (= R231), D260 (= D255), E265 (= E260), H288 (= H279)
- binding 2-oxoglutaric acid: R56 (= R49), S57 (= S50), C79 (≠ G72), I80 (= I73)
- binding nicotinamide-adenine-dinucleotide: I80 (= I73), F102 (≠ Y95), V108 (≠ T101), G154 (= G147), G156 (= G149), H157 (≠ N150), I158 (= I151), Y176 (= Y169), D177 (= D170), I178 (≠ Y172), K181 (= K175), H206 (= H201), V207 (≠ T202), P208 (= P203), A234 (= A229), S235 (≠ A230), R236 (= R231), H288 (= H279), G290 (= G281)
- binding phosphate ion: G81 (= G74), N83 (≠ D76)
Query Sequence
>WP_012536420.1 NCBI__GCF_000021485.1:WP_012536420.1
MPAVLIADKMSARAVEIFHERGIAVEVKTGLGKEALCAIIGQYDGLAIRSATNVDADVLA
AASRLKVVGRAGIGVDNVDIHAASKRGVIVMNTPYGNTVTTAEHAIALMMAAARMIPQAT
MSLKAGQWEKSRFQGVELYQKTLGVIGTGNIGSLVIARAQGLGMRVIAYDPYLSKIRAAD
LGVELVEMDTLLARADFLTVHTPLTDATRNLFRAETFAKMKPGAILVNAARGCIVDEAAL
YDALKSGHLRAAALDVFCKEPVHGDNPLLELDNFICTPHLGASTEEAQVNVAIQVAEQIS
AYLLRGVVQNAVNLPSVKEEELLLLQPYLNLGERLGLVLGQLAGSGLREVVIEYAGEVAE
LNTAALTTAILKGILQSALPETINAVNAPVLAKERGIGIETRKRESADELRARIAVTLRM
DQGERVAVGTLVHEHQARLVQLDGIDVEMPLAGDLLYIQNRDEPGLIGRIGGLLGAAGIN
IAQFHLGREKPAGAALSFIAVDQPLTEVLLEQVASLPGVLAARMLRL
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory