SitesBLAST
Comparing WP_012536841.1 NCBI__GCF_000021485.1:WP_012536841.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
3du4A Crystal structure of 7-keto-8-aminopelargonic acid bound 7,8- diaminopelargonic acid synthase in bacillus subtilis (see paper)
47% identity, 99% coverage: 4:449/449 of query aligns to 2:445/448 of 3du4A
- active site: F17 (= F19), Y146 (= Y149), E217 (= E222), D251 (= D256), A254 (= A259), K280 (= K285), A417 (≠ T421)
- binding 7-keto-8-aminopelargonic acid: L82 (= L85), Y146 (= Y149), G315 (= G320), S317 (≠ T322), R410 (= R414)
- binding pyridoxal-5'-phosphate: S112 (≠ D115), G113 (= G116), A114 (= A117), Y146 (= Y149), H147 (= H150), E217 (= E222), D251 (= D256), V253 (= V258), A254 (= A259), K280 (= K285), H316 (= H321), S317 (≠ T322)
P53555 L-Lysine--8-amino-7-oxononanoate transaminase; 7,8-diamino-pelargonic acid aminotransferase; DAPA AT; DAPA aminotransferase; 7,8-diaminononanoate synthase; DANS; Diaminopelargonic acid synthase; L-Lysine--8-amino-7-oxononanoate aminotransferase; EC 2.6.1.105 from Bacillus subtilis (strain 168) (see paper)
47% identity, 99% coverage: 4:449/449 of query aligns to 2:445/448 of P53555
- GA 113:114 (= GA 116:117) binding pyridoxal 5'-phosphate
- Y146 (= Y149) binding substrate
- K280 (= K285) modified: N6-(pyridoxal phosphate)lysine
- G315 (= G320) binding substrate
- HS 316:317 (≠ HT 321:322) binding pyridoxal 5'-phosphate
- R410 (= R414) binding substrate
6zhkA Crystal structure of adenosylmethionine-8-amino-7-oxononanoate aminotransferase from methanocaldococcus jannaschii dsm 2661
44% identity, 99% coverage: 3:446/449 of query aligns to 1:435/438 of 6zhkA
6wnnA Bacillus subtilis bioa in complex with amino donor l-lys
43% identity, 99% coverage: 7:449/449 of query aligns to 2:417/420 of 6wnnA
- active site: F14 (= F19), Y143 (= Y149), D223 (= D256), K252 (= K285)
- binding (2S)-2-amino-6-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]hexanoic acid: F14 (= F19), W51 (= W57), S109 (≠ D115), G110 (= G116), A111 (= A117), Y143 (= Y149), H144 (= H150), D223 (= D256), V225 (= V258), K252 (= K285), R382 (= R414)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: H288 (= H321), S289 (≠ T322)
3dodA Crystal structure of plp bound 7,8-diaminopelargonic acid synthase in bacillus subtilis (see paper)
43% identity, 99% coverage: 7:449/449 of query aligns to 3:414/417 of 3dodA
- active site: F15 (= F19), E186 (= E222), D220 (= D256), A223 (= A259), K249 (= K285), A386 (≠ T421)
- binding pyridoxal-5'-phosphate: W52 (= W57), S110 (≠ D115), G111 (= G116), A112 (= A117), D220 (= D256), V222 (= V258), K249 (= K285), H285 (= H321), S286 (≠ T322)
6erkA Crystal structure of diaminopelargonic acid aminotransferase from psychrobacter cryohalolentis (see paper)
34% identity, 98% coverage: 8:446/449 of query aligns to 7:415/420 of 6erkA
4w1vA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole inhibitor (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:418/425 of 4w1vA
- active site: Y18 (≠ F19), Y147 (= Y149), E210 (= E222), D244 (= D256), A247 (= A259), K273 (= K285), Y397 (≠ T421)
- binding dimethyl (2R)-5-(3-fluorophenyl)-1H-pyrrolo[1,2-c][1,3]thiazole-6,7-dicarboxylate 2-oxide: P17 (= P18), Y18 (≠ F19), W54 (≠ L56), M81 (≠ T83), G83 (≠ L85), Y147 (= Y149), G306 (= G320), P307 (≠ H321), T308 (= T322), F392 (≠ L416)
- binding pyridoxal-5'-phosphate: G114 (= G116), S115 (≠ A117), Y147 (= Y149), H148 (= H150), E210 (= E222), D244 (= D256), I246 (≠ V258), K273 (= K285)
4cxrA Mycobaterium tuberculosis transaminase bioa complexed with 1-(1,3- benzothiazol-2-yl)methanamine (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:418/425 of 4cxrA
- active site: Y18 (≠ F19), Y147 (= Y149), E210 (= E222), D244 (= D256), A247 (= A259), K273 (= K285), Y397 (≠ T421)
- binding 1-(1,3-benzothiazol-2-yl)methanamine: Y18 (≠ F19), W54 (≠ L56), W55 (= W57), A216 (= A228)
- binding pyridoxal-5'-phosphate: G114 (= G116), S115 (≠ A117), Y147 (= Y149), H148 (= H150), E210 (= E222), D244 (= D256), I246 (≠ V258), K273 (= K285), P307 (≠ H321), T308 (= T322)
4cxqA Mycobaterium tuberculosis transaminase bioa complexed with substrate kapa (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:420/427 of 4cxqA
- active site: Y18 (≠ F19), Y149 (= Y149), E212 (= E222), D246 (= D256), A249 (= A259), K275 (= K285), Y399 (≠ T421)
- binding 7-keto-8-aminopelargonic acid: W56 (≠ L56), Y149 (= Y149), G308 (= G320), T310 (= T322), R392 (= R414)
- binding pyridoxal-5'-phosphate: G116 (= G116), S117 (≠ A117), Y149 (= Y149), H150 (= H150), G151 (= G151), E212 (= E222), D246 (= D256), I248 (≠ V258), K275 (= K285), P309 (≠ H321), T310 (= T322)
3lv2A Crystal structure of mycobacterium tuberculosis 7,8-diaminopelargonic acid synthase in complex with substrate analog sinefungin (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 11:412/421 of 3lv2A
- active site: Y143 (= Y149), E206 (= E222), D240 (= D256), A243 (= A259), K269 (= K285), Y391 (≠ T421)
- binding pyridoxal-5'-phosphate: G110 (= G116), S111 (≠ A117), Y143 (= Y149), H144 (= H150), E206 (= E222), D240 (= D256), I242 (≠ V258), K269 (= K285)
- binding sinefungin: Y19 (≠ F19), W50 (≠ L56), L369 (≠ Y400), R384 (= R414), P385 (= P415), F386 (≠ L416)
6ge8A Crystal structure of mycobacterium tuberculosis bioa
36% identity, 96% coverage: 11:442/449 of query aligns to 11:416/422 of 6ge8A
- binding [(2~{S})-3-(1~{H}-indol-3-yl)-1-[(2~{E})-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylidene]hydrazinyl]-1-oxidanylidene-propan-2-yl]azanium: Y19 (≠ F19), W58 (≠ L56), G118 (= G116), S119 (≠ A117), Y151 (= Y149), H152 (= H150), E208 (= E222), D242 (= D256), I244 (≠ V258), K271 (= K285), P305 (≠ H321), T306 (= T322)
4wydA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase from mycobacterium tuberculosis complexed with a fragment from dsf screening (see paper)
36% identity, 96% coverage: 11:442/449 of query aligns to 10:421/430 of 4wydA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding N-methyl-1-[4-(1H-pyrazol-1-ylmethyl)phenyl]methanamine: Y18 (≠ F19), W57 (≠ L56), W58 (= W57), Y150 (= Y149), A219 (= A228), G309 (= G320), T311 (= T322), F395 (≠ L416)
- binding pyridoxal-5'-phosphate: G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), E213 (= E222), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
5te2A Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a mechanism-based inhibitor (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 5te2A
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding [5-hydroxy-4-({[6-(3-hydroxypropyl)-4-oxo-1,4-dihydropyridin-3-yl]amino}methyl)-6-methylpyridin-3-yl]methyl dihydrogen phosphate: Y18 (≠ F19), W57 (≠ L56), G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), G152 (= G151), D247 (= D256), I249 (≠ V258), K276 (= K285), G309 (= G320), P310 (≠ H321), T311 (= T322)
4xjoA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with an inhibitor optimized from hts lead (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4xjoA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding 5-[4-(3-chlorobenzoyl)piperazin-1-yl]-1H-inden-1-one: P17 (= P18), Y18 (≠ F19), W57 (≠ L56), M84 (≠ T83), G86 (≠ L85), Y150 (= Y149), G165 (vs. gap), G166 (= G160), A219 (= A228), P310 (≠ H321), T311 (= T322)
- binding pyridoxal-5'-phosphate: G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), G152 (= G151), E213 (= E222), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
4xewA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a hts lead compound (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4xewA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding 6-(2-fluorophenyl)[1,3]dioxolo[4,5-g]quinolin-8(5H)-one: P17 (= P18), Y18 (≠ F19), W57 (≠ L56), Y150 (= Y149), P310 (≠ H321), T311 (= T322), R393 (= R414), F395 (≠ L416)
- binding pyridoxal-5'-phosphate: G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), G152 (= G151), E213 (= E222), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
4wyfA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a dsf fragment hit (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4wyfA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding N-(1-oxo-1H-inden-5-yl)acetamide: M84 (≠ T83), G86 (≠ L85), G309 (= G320), P310 (≠ H321), T311 (= T322)
- binding pyridoxal-5'-phosphate: G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), G152 (= G151), E213 (= E222), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
4wycA Crystal structure of 7,8-diaminopelargonic acid synthase (bioa) from mycobacterium tuberculosis, complexed with a thiazole benzamide inhibitor (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4wycA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding 4-(1H-imidazol-1-yl)benzamide: P17 (= P18), Y18 (≠ F19), W57 (≠ L56), M84 (≠ T83), G86 (≠ L85), Y150 (= Y149), G309 (= G320)
- binding pyridoxal-5'-phosphate: G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), G152 (= G151), E213 (= E222), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
4mqrA Mycobaterium tuberculosis transaminase bioa complexed with e)-5- hydroxy-4-(((z)-isonicotinoyldiazenyl)methylene)-6-methyl-1,4- dihydropyridin-3-yl)methyl phosphate (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4mqrA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding [(4Z)-5-hydroxy-6-methyl-4-{[(E)-(pyridin-4-ylcarbonyl)diazenyl]methylidene}-1,4-dihydropyridin-3-yl]methyl dihydrogen phosphate: Y18 (≠ F19), W57 (≠ L56), G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), D247 (= D256), I249 (≠ V258), K276 (= K285), G309 (= G320), P310 (≠ H321), T311 (= T322)
4mqqA Mycobaterium tuberculosis transaminase bioa complexed with benzo[d]thiazole-2-carbohydrazide (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4mqqA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding (4-{[(E)-(1,3-benzothiazol-2-ylcarbonyl)diazenyl]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate: Y18 (≠ F19), W57 (≠ L56), W58 (= W57), G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), D247 (= D256), I249 (≠ V258), K276 (= K285), P310 (≠ H321), T311 (= T322)
4mqpA Mycobaterium tuberculosis transaminase bioa complexed with 2- hydrazinylbenzo[d]thiazole (see paper)
37% identity, 96% coverage: 11:442/449 of query aligns to 10:421/428 of 4mqpA
- active site: Y18 (≠ F19), Y150 (= Y149), E213 (= E222), D247 (= D256), A250 (= A259), K276 (= K285), Y400 (≠ T421)
- binding (4-{[(E)-1,3-benzothiazol-2-yldiazenyl]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate: W57 (≠ L56), W58 (= W57), G117 (= G116), S118 (≠ A117), Y150 (= Y149), H151 (= H150), E213 (= E222), A219 (= A228), D247 (= D256), I249 (≠ V258), K276 (= K285), Y400 (≠ T421)
Query Sequence
>WP_012536841.1 NCBI__GCF_000021485.1:WP_012536841.1
MTETEVLREWDRRYFWHPFTQMQCYGDDDPWIIDRAEGNYVYDTQGHRCLDAIASLWCNV
HGHRHPRLDAALIGQLGKVAHSTALGAGNAPAIRLAKALVEITPPSLQHCFFSEDGAEAV
EVAIKMAAQYWCNLGRPEKRLFLTLDNAYHGDTVGAVSVGGFPLFHEVYGHLLFPTLRLP
SPYVLQWEDCEGDPEQATAVWLAVLETTLQKQSGEIAAVILEGGVQGAAGILPFPPGILA
GAQHLCRAYEVLLIIDEVATGFGRSGKLFSCEWESVEPDLLALGKGLSGGYLPVAATLAA
EHVYAAFLAPFGETRQFYYGHTYTANPLACAVALENLALFAEGGVLAALPEKIARLRAGL
QRFHGQSWAGEVRQFGLMAAIALRDPGTNAPYPYGDRVEYAVCRRAREMGVYSRPLGDLL
TIVPPLSVTAAEIDTILNVLYDAMAEGRS
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory