Comparing WP_012542544.1 NCBI__GCF_000025465.1:WP_012542544.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 6 hits to proteins with known functional sites (download)
O04373 IAA-amino acid hydrolase ILR1-like 4; jasmonoyl-L-amino acid hydrolase; EC 3.5.1.-; EC 3.5.1.127 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
36% identity, 96% coverage: 14:390/392 of query aligns to 46:422/440 of O04373
P54955 N-acetylcysteine deacetylase; S-(2-succino)cysteine metabolism operon protein P; EC 3.5.1.- from Bacillus subtilis (strain 168)
35% identity, 96% coverage: 10:386/392 of query aligns to 4:371/380 of P54955
4ewtA The crystal structure of a putative aminohydrolase from methicillin resistant staphylococcus aureus (see paper)
37% identity, 91% coverage: 1:355/392 of query aligns to 1:357/389 of 4ewtA
Sites not aligning to the query:
P54968 IAA-amino acid hydrolase ILR1; EC 3.5.1.- from Arabidopsis thaliana (Mouse-ear cress) (see paper)
34% identity, 95% coverage: 16:386/392 of query aligns to 52:422/442 of P54968
6slfA Nalpha-acylglutamine aminoacylase from corynebacterium sp.Releasing human axilla odorants co-crystallised with high affinity inhibitor (see paper)
35% identity, 86% coverage: 5:340/392 of query aligns to 8:344/398 of 6slfA
Sites not aligning to the query:
3ramA Crystal structure of hmra (see paper)
24% identity, 70% coverage: 5:279/392 of query aligns to 7:261/391 of 3ramA
Sites not aligning to the query:
>WP_012542544.1 NCBI__GCF_000025465.1:WP_012542544.1
MSDYVIPEIKATEDEMISIRHYLHANPELSLEEFNTSELVAGKLAEWGYQVTRGLGKTGV
VGSLSKGDSPRTIGLRADMDALPIHETTDLPWASTVPGKMHACGHDGHTTILLAAAKYIA
SPACQFNGTVHLIFQPAEEAIGGADLMIKDGLFEQFPCERIFGLHNMPGLPVGKLGFYAG
NFMASADTVKITITGYGGHGAHPERTVDPIVAGAALVMALQSIVARNVPPGETAVVSVGT
FQAGIASNVIPESVVMELSVRAMKPDIRDLLIKRIHELADFTAKSYGASSVVEVYDSYPV
LTNSPEETDFARALALEVFGREGVLESVSPMNASEDFAFMLRERPGSYFLLGNGEKGEKG
GCMVHNPGYDFNDDIITTGATLFARLVEKHCR
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory