SitesBLAST
Comparing WP_012566776.1 NCBI__GCF_000016185.1:WP_012566776.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8rpgA Crystal structure of an alcohol oxidase from streptomyces hiroshimensis (see paper)
40% identity, 97% coverage: 2:526/540 of query aligns to 3:515/518 of 8rpgA
- binding flavin-adenine dinucleotide: G9 (= G8), G11 (= G10), S12 (= S11), A13 (= A12), E33 (= E32), A34 (= A33), W59 (= W59), P77 (= P77), R78 (= R78), G79 (= G79), G84 (= G84), S85 (= S85), N89 (= N89), F90 (≠ A90), M92 (≠ I92), Q216 (≠ H216), V217 (≠ A217), A247 (≠ S251), F453 (≠ Y466), A488 (= A499), H498 (≠ N509), T499 (= T510), H500 (≠ N511), A503 (≠ T514)
5nccA Structure of fatty acid photodecarboxylase in complex with fad and palmitic acid (see paper)
39% identity, 98% coverage: 2:531/540 of query aligns to 24:575/578 of 5nccA
- active site: R347 (≠ N317), L420 (≠ V380), I421 (≠ C381), S507 (≠ V465), A509 (≠ H467), G552 (= G508), Q553 (≠ N509)
- binding flavin-adenine dinucleotide: G30 (= G8), G32 (= G10), T33 (≠ S11), A34 (= A12), L53 (= L31), E54 (= E32), A55 (= A33), F74 (≠ M52), W80 (= W59), A98 (≠ P77), G100 (= G79), G105 (= G84), S106 (= S85), N110 (= N89), A111 (= A90), T112 (≠ M91), L113 (≠ I92), V238 (≠ A217), A278 (≠ S251), H282 (≠ N255), L286 (= L259), N508 (≠ Y466), Q553 (≠ N509), T554 (= T510), G555 (≠ N511), V558 (≠ T514)
A0A248QE08 Fatty acid photodecarboxylase, chloroplastic; CvFAP; EC 4.1.1.106 from Chlorella variabilis (Green alga) (see paper)
40% identity, 98% coverage: 2:531/540 of query aligns to 84:642/654 of A0A248QE08
- TA 93:94 (≠ SA 11:12) binding FAD
- E114 (= E32) binding FAD
- L162 (≠ T81) binding FAD
- S166 (= S85) binding FAD
- NATL 170:173 (≠ NAMI 89:92) binding FAD
- V298 (≠ A217) binding FAD
- C432 (≠ A337) binding hexadecanoate
- R451 (≠ H357) binding hexadecanoate
- Y466 (= Y370) binding hexadecanoate
- Q486 (≠ H379) binding hexadecanoate
- G622 (≠ N511) binding FAD
6yrvAAA structure of fap after illumination at 100k (see paper)
40% identity, 98% coverage: 2:531/540 of query aligns to 8:566/573 of 6yrvAAA
- binding carbon dioxide: R375 (≠ H357), N499 (≠ Y466)
- binding flavin-adenine dinucleotide: G14 (= G8), G16 (= G10), T17 (≠ S11), A18 (= A12), L37 (= L31), E38 (= E32), A39 (= A33), F58 (≠ M52), W64 (= W59), A82 (≠ P77), G89 (= G84), S90 (= S85), N94 (= N89), A95 (= A90), T96 (≠ M91), L97 (≠ I92), M191 (≠ T185), V222 (≠ A217), C264 (≠ S250), A265 (≠ S251), G266 (= G252), H269 (≠ N255), N499 (≠ Y466), A534 (= A499), Q544 (≠ N509), T545 (= T510), G546 (≠ N511)
- binding heptadecane: V377 (≠ L359), G379 (vs. gap), M380 (≠ A360), G386 (≠ H366), T389 (= T369), Y390 (= Y370), F393 (vs. gap), T408 (≠ S377), Q410 (≠ H379)
8b7sA Crystal structure of the chloramphenicol-inactivating oxidoreductase from novosphingobium sp (see paper)
38% identity, 97% coverage: 2:526/540 of query aligns to 5:451/458 of 8b7sA
- binding flavin-adenine dinucleotide: G11 (= G8), G13 (= G10), S14 (= S11), A15 (= A12), E35 (= E32), A36 (= A33), W47 (= W59), P65 (= P77), G67 (= G79), V180 (≠ A217), A214 (≠ S251), G215 (= G252), A218 (≠ N255), T270 (≠ S334), Y391 (= Y466), A424 (= A499), I435 (≠ T510), N436 (= N511)
8rpfA Crystal structure of an alcohol-oxidase from sphingobacterium daejeonense (see paper)
34% identity, 97% coverage: 2:525/540 of query aligns to 3:530/534 of 8rpfA
- binding 1-butanol: S62 (= S62), R218 (≠ T218), N401 (≠ D397), Y403 (≠ M399), A405 (= A401), P406 (= P402), L407 (= L403)
- binding flavin-adenine dinucleotide: G9 (= G8), G11 (= G10), T12 (≠ S11), E33 (= E32), A34 (= A33), W59 (= W59), P77 (= P77), G79 (= G79), G84 (= G84), S85 (= S85), N89 (= N89), V92 (≠ I92), V217 (≠ A217), A251 (≠ S251), N255 (= N255), F468 (≠ Y466), A504 (= A499), H514 (≠ N509), T515 (= T510), M516 (≠ N511), V519 (≠ T514)
4mjwA Crystal structure of choline oxidase in complex with the reaction product glycine betaine (see paper)
36% identity, 98% coverage: 2:529/540 of query aligns to 14:530/532 of 4mjwA
- active site: I333 (≠ S339), P377 (≠ V380), N378 (≠ C381), V464 (= V465), H466 (= H467), V509 (≠ G508), N510 (= N509)
- binding flavin-adenine dinucleotide: G20 (= G8), G22 (= G10), S23 (= S11), E44 (= E32), A45 (= A33), W71 (= W59), R89 (= R78), A90 (≠ G79), G95 (= G84), C96 (≠ S85), H99 (≠ C88), N100 (= N89), S101 (≠ A90), I103 (= I92), R231 (≠ H216), A232 (= A217), T269 (≠ S251), G270 (= G252), D273 (≠ N255), Y465 (= Y466), H466 (= H467), A500 (= A499), N510 (= N509), P511 (≠ T510), N512 (= N511), V515 (≠ T514)
3ljpA Crystal structure of choline oxidase v464a mutant (see paper)
36% identity, 98% coverage: 2:529/540 of query aligns to 14:530/530 of 3ljpA
- active site: I333 (≠ S339), P377 (≠ V380), N378 (≠ C381), A464 (≠ V465), H466 (= H467), V509 (≠ G508), N510 (= N509)
- binding dihydroflavine-adenine dinucleotide: G22 (= G10), S23 (= S11), E44 (= E32), A45 (= A33), W71 (= W59), R89 (= R78), A90 (≠ G79), G95 (= G84), C96 (≠ S85), H99 (≠ C88), N100 (= N89), S101 (≠ A90), I103 (= I92), A232 (= A217), T269 (≠ S251), D273 (≠ N255), Y465 (= Y466), H466 (= H467), D499 (= D498), A500 (= A499), N510 (= N509), P511 (≠ T510), N512 (= N511), V515 (≠ T514)
2jbvA Crystal structure of choline oxidase reveals insights into the catalytic mechanism (see paper)
36% identity, 97% coverage: 2:526/540 of query aligns to 14:527/527 of 2jbvA
- active site: I333 (≠ S339), P377 (≠ V380), N378 (≠ C381), V464 (= V465), H466 (= H467), V509 (≠ G508), N510 (= N509)
- binding [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-[(4aS,10aR)-7,8-dimethyl-2,4-dioxo-1,3,4,4a,5,10a-hexahydrobenzo[g]pteridin-10(2H)-yl]-2,3,4-trihydroxypentyl dihydrogen diphosphate: G22 (= G10), S23 (= S11), E44 (= E32), A45 (= A33), W71 (= W59), A90 (≠ G79), G95 (= G84), C96 (≠ S85), H99 (≠ C88), N100 (= N89), S101 (≠ A90), I103 (= I92), R231 (≠ H216), A232 (= A217), T269 (≠ S251), G270 (= G252), D273 (≠ N255), V464 (= V465), Y465 (= Y466), H466 (= H467), D499 (= D498), A500 (= A499), N510 (= N509), P511 (≠ T510), N512 (= N511), V515 (≠ T514)
4ha6A Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex (see paper)
37% identity, 96% coverage: 3:522/540 of query aligns to 3:501/508 of 4ha6A
- active site: F360 (≠ V380), G361 (≠ C381), H444 (≠ V465), H446 (= H467), G487 (= G508), P488 (≠ N509)
- binding flavin-adenine dinucleotide: G8 (= G8), G10 (= G10), S11 (= S11), A12 (= A12), E32 (= E32), A33 (= A33), W58 (= W59), R77 (= R78), G78 (= G79), G83 (= G84), S84 (= S85), L87 (≠ C88), H88 (≠ N89), A89 (= A90), M90 (= M91), G91 (≠ I92), V218 (≠ A217), A251 (≠ S251), G252 (= G252), E255 (≠ N255), H445 (≠ Y466), A478 (= A499), P488 (≠ N509), I489 (≠ T510), H490 (≠ N511)
- binding 4-(aminomethyl)-5-(hydroxymethyl)-2-methylpyridin-3-ol: A89 (= A90), S314 (≠ M325), H444 (≠ V465), H446 (= H467)
3t37A Crystal structure of pyridoxine 4-oxidase from mesorbium loti
37% identity, 96% coverage: 3:522/540 of query aligns to 3:501/509 of 3t37A
- active site: F360 (≠ V380), G361 (≠ C381), H444 (≠ V465), H446 (= H467), G487 (= G508), P488 (≠ N509)
- binding flavin-adenine dinucleotide: G8 (= G8), G10 (= G10), S11 (= S11), A12 (= A12), E32 (= E32), A33 (= A33), W58 (= W59), R77 (= R78), G78 (= G79), R79 (≠ K80), G83 (= G84), S84 (= S85), H88 (≠ N89), A89 (= A90), G91 (≠ I92), R217 (≠ H216), V218 (≠ A217), A251 (≠ S251), E255 (≠ N255), H445 (≠ Y466), A478 (= A499), P488 (≠ N509), I489 (≠ T510), H490 (≠ N511)
5oc1A Crystal structure of aryl-alcohol oxidase from pleurotus eryngii in complex with p-anisic acid (see paper)
31% identity, 98% coverage: 2:529/540 of query aligns to 2:565/565 of 5oc1A
- active site: V339 (= V319), N413 (≠ V380), A414 (≠ C381), I499 (≠ V465), H501 (= H467), A544 (≠ G508), H545 (≠ N509)
- binding 4-methoxybenzoic acid: Y91 (≠ A90), I356 (≠ F336), I390 (≠ Y370), F396 (= F376), T412 (≠ H379), I499 (≠ V465), H501 (= H467), H545 (≠ N509)
- binding flavin-adenine dinucleotide: G8 (= G8), G10 (= G10), N11 (≠ S11), A12 (= A12), E32 (= E32), A33 (= A33), W60 (= W59), P78 (= P77), G80 (= G79), G85 (= G84), S86 (= S85), H90 (≠ N89), Y91 (≠ A90), V93 (≠ I92), V230 (≠ A217), S270 (= S250), A271 (≠ S251), G272 (= G252), F500 (≠ Y466), H545 (≠ N509), T546 (= T510), Q547 (≠ N511), I550 (≠ T514)
3fimB Crystal structure of aryl-alcohol-oxidase from pleurotus eryingii (see paper)
31% identity, 98% coverage: 2:529/540 of query aligns to 2:565/565 of 3fimB
- active site: V339 (= V319), N413 (≠ V380), A414 (≠ C381), I499 (≠ V465), H501 (= H467), A544 (≠ G508), H545 (≠ N509)
- binding flavin-adenine dinucleotide: G8 (= G8), N11 (≠ S11), A12 (= A12), E32 (= E32), A33 (= A33), W60 (= W59), P78 (= P77), G80 (= G79), G85 (= G84), S86 (= S85), H90 (≠ N89), Y91 (≠ A90), V93 (≠ I92), V230 (≠ A217), S270 (= S250), A271 (≠ S251), F500 (≠ Y466), H501 (= H467), H545 (≠ N509), T546 (= T510), Q547 (≠ N511), I550 (≠ T514)
4udqA Crystal structure of 5-hydroxymethylfurfural oxidase (hmfo) in the reduced state
34% identity, 97% coverage: 1:525/540 of query aligns to 1:523/525 of 4udqA
- active site: L331 (≠ M331), F364 (≠ C381), W365 (≠ Q382), V461 (= V465), H463 (= H467), A506 (≠ G508), N507 (= N509)
- binding flavin-adenine dinucleotide: G8 (= G8), G10 (= G10), T11 (≠ S11), A12 (= A12), E32 (= E32), A33 (= A33), W64 (= W59), G88 (= G79), G93 (= G84), G94 (≠ S85), N98 (= N89), M99 (≠ A90), V101 (≠ I92), V229 (≠ A217), T261 (≠ S250), A262 (≠ S251), W462 (≠ Y466), H463 (= H467), A497 (= A499), N507 (= N509), T508 (= T510), N509 (= N511), T512 (= T514)
E4QP00 5-(hydroxymethyl)furfural oxidase; 5-hydroxymethylfurfural oxidase; HMFO; Thiol oxidase; EC 1.1.3.47; EC 1.8.3.- from Methylovorus sp. (strain MP688) (see paper)
34% identity, 97% coverage: 1:525/540 of query aligns to 5:527/531 of E4QP00
- V101 (≠ C88) mutation to H: Abolishes activity.
- M103 (≠ A90) mutation to A: 16-fold reduction in catalytic efficiency on vanillyl alcohol.
- V367 (= V380) mutation to K: 1.6-fold reduction in catalytic efficiency on vanillyl alcohol. Shows significantly improved activity on the aldehyde 5-formyl-2-furancarboxylate, which results in a better 5-hydroxymethylfurfural to 2,5-furandicarboxylate conversion.; mutation to R: 1.4-fold reduction in catalytic efficiency on vanillyl alcohol. Shows significantly improved activity on the aldehyde 5-formyl-2-furancarboxylate, which results in a better 5-hydroxymethylfurfural to 2,5-furandicarboxylate conversion. Displays a catalytic efficiency toward 5-formyl-2-furancarboxylate that is over 1000-fold higher than that for wild-type; when associated with F-466.
- W369 (≠ Q382) mutation to A: 7.5-fold reduction in catalytic efficiency on vanillyl alcohol.
- V465 (= V465) mutation to A: 18-fold reduction in catalytic efficiency on vanillyl alcohol.
- W466 (≠ Y466) mutation to A: 39-fold reduction in catalytic efficiency on vanillyl alcohol. In contrast to wild-type, is active on secondary alcohols, such as (S)-1-phenylethanol, and is strictly enantionselective as this mutant has no activity on (R)-1-phenylethanol. Shows increased activity on the aldehyde 5-formyl-2-furancarboxylate.; mutation to F: 3.4-fold reduction in catalytic efficiency on vanillyl alcohol. In contrast to wild-type, is active on secondary alcohols, such as (S)-1-phenylethanol, and is strictly enantionselective as this mutant has no activity on (R)-1-phenylethanol. Shows increased activity on the aldehyde 5-formyl-2-furancarboxylate. Displays a catalytic efficiency toward 5-formyl-2-furancarboxylate that is over 1000-fold higher than that for wild-type; when associated with R-367.
- H467 (= H467) mutation to A: Abolishes activity.
- N511 (= N509) mutation to A: 53-fold reduction in catalytic efficiency on vanillyl alcohol.
9avhA Crystal structure of an aryl-alcohol-oxidase from bjerkandera adusta. (see paper)
30% identity, 98% coverage: 1:531/540 of query aligns to 13:578/578 of 9avhA
- binding 4-methoxybenzoic acid: F103 (≠ A90), H423 (= H379), I510 (≠ V465), H512 (= H467), H556 (≠ N509)
- binding flavin-adenine dinucleotide: G20 (= G8), G22 (= G10), N23 (≠ S11), A24 (= A12), E44 (= E32), A45 (= A33), G97 (= G84), S98 (= S85), N102 (= N89), F103 (≠ A90), E105 (≠ I92), T240 (≠ H216), V241 (≠ A217), A282 (≠ S251), W511 (≠ Y466), H512 (= H467), G546 (≠ A499), H556 (≠ N509), P557 (≠ T510), M558 (≠ N511), I561 (≠ T514)
Q3L245 Pyranose dehydrogenase 1; PDH 1; Pyranose:quinone oxidoreductase 1; EC 1.1.99.29 from Leucoagaricus meleagris (Western flat-topped agaric) (Agaricus meleagris) (see 2 papers)
30% identity, 98% coverage: 2:530/540 of query aligns to 41:602/602 of Q3L245
- N100 (= N60) modified: carbohydrate, N-linked (GlcNAc...) asparagine
- H128 (≠ C88) modified: Tele-8alpha-FAD histidine
- N344 (= N288) modified: carbohydrate, N-linked (GlcNAc...) asparagine
- H537 (= H467) active site, Proton acceptor
- H581 (≠ N509) active site
Sites not aligning to the query:
4h7uA Crystal structure of pyranose dehydrogenase from agaricus meleagris, wildtype (see paper)
30% identity, 98% coverage: 2:530/540 of query aligns to 16:577/577 of 4h7uA
- active site: A343 (= A313), V426 (≠ C381), Y510 (≠ V465), H512 (= H467), A555 (≠ G508), H556 (≠ N509)
- binding [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl (2R,3S,4S)-2,3,4-trihydroxy-5-[(4aR)-4a-hydroxy-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]pentyl dihydrogen diphosphate (non-preferred name): G22 (= G8), G24 (= G10), T25 (≠ S11), A26 (= A12), E46 (= E32), A47 (= A33), W74 (= W59), G99 (= G84), C100 (≠ S85), H103 (≠ C88), N104 (= N89), G105 (≠ A90), V107 (≠ I92), L242 (≠ H216), V243 (≠ A217), G282 (≠ S251), G283 (= G252), A286 (≠ N255), H512 (= H467), A546 (= A499), H556 (≠ N509), T557 (= T510), Q558 (≠ N511), V561 (≠ T514)
3q9tA Crystal structure analysis of formate oxidase (see paper)
29% identity, 97% coverage: 2:527/540 of query aligns to 7:571/577 of 3q9tA
- active site: A335 (≠ V319), D422 (≠ C381), A508 (≠ V465), H510 (= H467), C552 (≠ G508), R553 (≠ N509)
- binding [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl(2R,3S,4S)-5-(8-formyl-7-methyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogendiphosphate: G15 (= G10), T16 (≠ S11), E37 (= E32), A38 (= A33), W65 (= W59), T85 (vs. gap), R86 (= R78), G87 (= G79), G92 (= G84), S93 (= S85), N97 (= N89), Y98 (≠ A90), F99 (≠ M91), T100 (≠ I92), S229 (≠ A217), S265 (= S250), Q266 (≠ S251), E270 (≠ N255), F509 (≠ Y466), D542 (= D498), A543 (= A499), R553 (≠ N509), I554 (≠ T510), Q555 (≠ N511), V558 (≠ T514)
5zu2A Effect of mutation (r554a) on fad modification in aspergillus oryzae rib40formate oxidase (see paper)
29% identity, 98% coverage: 2:528/540 of query aligns to 7:572/577 of 5zu2A
- binding flavin-adenine dinucleotide: G15 (= G10), T16 (≠ S11), E37 (= E32), A38 (= A33), W65 (= W59), T85 (vs. gap), R86 (= R78), G87 (= G79), G92 (= G84), S93 (= S85), N97 (= N89), Y98 (≠ A90), T100 (≠ I92), S229 (≠ A217), S265 (= S250), Q266 (≠ S251), E270 (≠ N255), F509 (≠ Y466), D542 (= D498), A543 (= A499), A553 (≠ N509), I554 (≠ T510), Q555 (≠ N511), V558 (≠ T514)
Query Sequence
>WP_012566776.1 NCBI__GCF_000016185.1:WP_012566776.1
MFDYVVVGGGSAGCVMASRLSEDRDVKVCLLEAGPPDKSMAIHVPAGMVAMMRSKDLNWN
YSTEPQKHLGGRRLYWPRGKTLGGSSACNAMIYIRGHARDYDEWAELGCTGWDHASLLPM
FRRAENNERGGDDRHGTGGPLNVADLRYTNPLAEMFLRSAEGLGFRRNEDFNGPEQEGFG
YYQVTQKGGERCSAARAYLPPEVRARPNLTIVTGAHATRLVVENGRVVSVEYVRDGVPGC
AMAYTEVILSSGALNTPHLMLLSGIGPGDEIHRHGLKVVHELPGVGRNLQDHLDIRPMYR
DGTRHSFSWKLSALPRNLVEIVRYMTSRQGMLTSNFAESGGFVKSDPSLERPDLQFHFLA
CIIEDHGRTYVTEHGFSLHVCQLRPTSRGHVGLRSADPMVAPLLDPNYLATEEDRAALRI
GLKLAREIANTGPLATANQGEIVPGPDVTSPEAIDEAIRQHSETVYHPVGTCRMGTDPMA
VVDPELRVHGLDGLRVVDASIMPRLVGGNTNAPTIMIAEKAADLIRGRRNLRPGDLQAAE
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SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory