Comparing WP_012568544.1 NCBI__GCF_000016185.1:WP_012568544.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 8 hits to proteins with known functional sites (download)
6vh5D Crystal structure of prephenate dehydratase from brucella melitensis biovar abortus 2308 in complex with phenylalanine
56% identity, 96% coverage: 2:279/290 of query aligns to 3:282/282 of 6vh5D
7am0B Gqqa- a novel type of quorum quenching acylases (see paper)
56% identity, 95% coverage: 7:281/290 of query aligns to 3:277/278 of 7am0B
2qmxA The crystal structure of l-phe inhibited prephenate dehydratase from chlorobium tepidum tls (see paper)
39% identity, 92% coverage: 7:273/290 of query aligns to 3:273/278 of 2qmxA
P0A9J8 Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli (strain K12)
32% identity, 92% coverage: 8:275/290 of query aligns to 106:377/386 of P0A9J8
Sites not aligning to the query:
7alzA Gqqa- a novel type of quorum quenching acylases (see paper)
54% identity, 42% coverage: 159:281/290 of query aligns to 72:193/194 of 7alzA
3mwbB The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
33% identity, 83% coverage: 32:273/290 of query aligns to 29:271/303 of 3mwbB
3mwbA The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
33% identity, 83% coverage: 32:273/290 of query aligns to 29:274/306 of 3mwbA
3luyA Putative chorismate mutase from bifidobacterium adolescentis
26% identity, 63% coverage: 94:277/290 of query aligns to 100:289/326 of 3luyA
>WP_012568544.1 NCBI__GCF_000016185.1:WP_012568544.1
MSQPADIIAYQGAPGANSDLACRSVFPEMEPLPCAAFEDAFAAVREGRARLAMIPVENSV
AGRVADIHHLLPKGGLHIIGEHYQRVVHCLLAPKGATLAGLRQVHSHVQALGQCRGWLRE
RGLAPVTHADTAGAAADVARWNDPAQGAIASRLAAEIYGLDVLAEGIEDARHNTTRFVVM
AREPVVPPRGSGPCVTSFVFRVRSVPAALYKALGGFATNGVNLTKLESYLVDGRFTAAQF
YVEVEAHPEDRPLRLALEELAFFAREVTILGVYPAHPFRIKQGEDAAGED
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory