SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012591594.1 NCBI__GCF_000021745.1:WP_012591594.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8wm8B Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with nitrate (see paper)
27% identity, 68% coverage: 39:222/272 of query aligns to 33:218/265 of 8wm8B

query
sites
8wm8B
N
 
N
P
 
P
D
 
N
D
 
F
K
 
K
L
 
L
L
 
P
P
 
G
G
 
P
L
 
I
D
 
E
A
 
T
L
 
F
V
 
S
A
 
E
A
 
T
V
 
W
Q
 
D
R
 
P
V
 
F
A
 
I
F
 
I
S
 
N
P
 
P
D
 
F
K
 
F
R
 
D
T
 
N
G
 
G
E
 
E
Y
 
S
-
 
D
-
 
K
-
 
G
L
 
L
L
 
G
W
 
W
S
 
Q
D
 
-
T
 
I
L
 
L
A
 
S
S
 
S
L
 
L
T
 
G
R
 
R
L
 
V
C
 
G
A
 
L
G
 
G
L
 
F
A
 
S
I
 
L
A
 
A
T
 
A
V
 
I
T
 
A
S
 
G
C
 
I
V
 
I
I
 
L
G
 
G
L
 
I
T
 
L
V
 
I
G
 
G
L
 
V
L
 
N
P
 
P
Y
 
L
L
 
V
R
 
Y
V
 
N
L
 
A
L
 
V
T
 
D
P
 
P
F
 
I
I
 
F
A
 
Q
V
 
V
L
 
L
S
 
R
M
 
T
I
 
V
P
 
P
P
 
P
L
 
L
A
 
A
I
 
W
L
 
L
P
 
P
I
 
I
L
 
S
F
 
L
I
 
A
M
 
A
F
 
F
G
 
Q
L
 
Q
G
 
A
E
 
N
A
 
P
S
 
S
K
 
A
I
 
I
V
 
F
L
 
V
I
 
I
V
 
F
I
 
I
-
 
T
G
 
S
I
 
I
A
 
W
P
 
P
F
 
I
M
 
L
T
 
L
R
 
-
D
 
N
L
 
T
A
 
T
L
 
V
R
 
G
V
 
V
S
 
Q
E
 
Q
L
 
I
P
 
P
A
 
Q
E
 
D
Q
 
Y
L
 
I
I
 
N
K
 
V
A
 
A
Q
 
K
T
 
V
L
 
L
G
 
R
A
 
L
T
 
K
T
 
G
W
 
V
Q
 
K
I
 
Y
L
 
F
T
 
F
R
 
K
V
 
I
V
 
V
A
 
F
P
 
P
Q
 
A
M
 
T
M
 
V
P
 
P
R
 
Y
L
 
I
I
 
F
D
 
T
S
 
G
V
 
L
R
 
R
L
 
I
S
 
G
L
 
I
G
 
G
A
 
L
A
 
S
W
 
W
L
|
L
Y
 
A
L
 
I
I
 
V
A
|
A
A
 
A
E
 
E
A
 
M
I
 
L
A
 
V
S
 
G
E
 
G
S
 
V
G
 
G
L
 
I
G
 
G

Query Sequence

>WP_012591594.1 NCBI__GCF_000021745.1:WP_012591594.1
MRLLSLRPGRGANLLLPAIPFILLILAYTIGSAVRHAGNPDDKLLPGLDALVAAVQRVAF
SPDKRTGEYLLWSDTLASLTRLCAGLAIATVTSCVIGLTVGLLPYLRVLLTPFIAVLSMI
PPLAILPILFIMFGLGEASKIVLIVIGIAPFMTRDLALRVSELPAEQLIKAQTLGATTWQ
ILTRVVAPQMMPRLIDSVRLSLGAAWLYLIAAEAIASESGLGFRIFLMRRYLAMDVILPY
VAWITFLAFLFDFILRRLQGGLYPWFAGARAK

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory