Comparing WP_012674002.1 NCBI__GCF_000021545.1:WP_012674002.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
P0AAH0 Phosphate import ATP-binding protein PstB; ABC phosphate transporter; Phosphate-transporting ATPase; EC 7.3.2.1 from Escherichia coli (strain K12) (see paper)
66% identity, 98% coverage: 6:254/254 of query aligns to 10:257/257 of P0AAH0
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
38% identity, 93% coverage: 18:253/254 of query aligns to 14:242/242 of 3c4jA
Sites not aligning to the query:
3c41J Abc protein artp in complex with amp-pnp/mg2+
38% identity, 93% coverage: 18:253/254 of query aligns to 14:242/242 of 3c41J
Sites not aligning to the query:
2olkA Abc protein artp in complex with adp-beta-s
38% identity, 93% coverage: 18:253/254 of query aligns to 14:242/242 of 2olkA
Sites not aligning to the query:
2oljA Abc protein artp in complex with adp/mg2+
38% identity, 93% coverage: 18:253/254 of query aligns to 14:242/242 of 2oljA
Sites not aligning to the query:
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
35% identity, 96% coverage: 7:250/254 of query aligns to 3:237/241 of 4u00A
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
36% identity, 92% coverage: 18:250/254 of query aligns to 12:237/240 of 4ymuJ
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
35% identity, 93% coverage: 15:249/254 of query aligns to 11:241/343 of P30750
Sites not aligning to the query:
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
35% identity, 93% coverage: 15:249/254 of query aligns to 12:242/344 of 6cvlD
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
35% identity, 93% coverage: 15:249/254 of query aligns to 12:242/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
35% identity, 93% coverage: 15:249/254 of query aligns to 12:242/344 of 3tuiC
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
37% identity, 96% coverage: 6:249/254 of query aligns to 25:259/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
37% identity, 96% coverage: 6:249/254 of query aligns to 25:259/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
36% identity, 96% coverage: 6:249/254 of query aligns to 25:259/260 of 7ahdC
Sites not aligning to the query:
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
36% identity, 83% coverage: 7:218/254 of query aligns to 3:208/253 of 6z5uK
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
36% identity, 83% coverage: 7:218/254 of query aligns to 5:210/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
36% identity, 83% coverage: 7:218/254 of query aligns to 5:210/263 of 7d08B
7qkrA Cryo-em structure of abc transporter ste6-2p from pichia pastoris with verapamil at 3.2 a resolution (see paper)
33% identity, 87% coverage: 23:242/254 of query aligns to 380:600/1199 of 7qkrA
Sites not aligning to the query:
6qexA Nanodisc reconstituted human abcb1 in complex with uic2 fab and taxol (see paper)
33% identity, 91% coverage: 3:234/254 of query aligns to 355:582/1182 of 6qexA
Sites not aligning to the query:
8jwfA Cryo-em structure of plasmodium falciparum multidrug resistance protein 1 with h1 helix in complex with mfq (see paper)
37% identity, 85% coverage: 6:221/254 of query aligns to 959:1170/1204 of 8jwfA
Sites not aligning to the query:
>WP_012674002.1 NCBI__GCF_000021545.1:WP_012674002.1
MAENLKMEVKNLNFYYSGNKLALKNINMPIYEKKITALIGPSGCGKTTLLRCFNRMHDLY
PGNRYEGEILLDGKNILDKDVDLMELRTKVGMVFQKPTPFPMSIFENIAYGLKLQGIKNK
TELKDRVEQALKEAALWEEVKDRLDTSAFGLSGGQQQRLCIARTIAVKPEVILFDEPTSA
LDPISTAKIEELIVELKKNHTIIIVTHNMQQAARVSDYTAFMYLGELIEFDSTDIIFTKP
NKKLTEDYISGRFG
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory