SitesBLAST

SitesBLAST – Find functional sites

SitesBLAST

Comparing WP_012674812.1 NCBI__GCF_000021545.1:WP_012674812.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 12 hits to proteins with known functional sites (download)

Q9FFF4 Acetolactate synthase small subunit 2, chloroplastic; ALS-interacting protein 3; Acetohydroxy-acid synthase small subunit 2; Protein valine-tolerant 1 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
46% identity, 94% coverage: 11:187/188 of query aligns to 68:240/477 of Q9FFF4

query
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Q9FFF4

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G88 (= G31) mutation to D: Resistance to valine inhibition.
T119 (= T64) mutation to I: In vat1-1; resistance to valine inhibition.

Sites not aligning to the query:

453 R→Q: In vat1-3; resistance to valine inhibition.

Q93YZ7 Acetolactate synthase small subunit 1, chloroplastic; ALS-interacting protein 1; Acetohydroxyacid synthase small subunit 1 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
47% identity, 87% coverage: 13:175/188 of query aligns to 80:239/491 of Q93YZ7

query
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Q93YZ7

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D95 (≠ H28) binding L-valine
G98 (= G31) mutation to E: Increased feedback inhibition by valine/isoleucine.
M99 (≠ V32) binding L-valine
I100 (≠ L33) binding L-valine
F107 (= F40) mutation to A: Decreased feedback inhibition by leucine and valine/isoleucine.
Y112 (= Y45) mutation to A: Increased feedback inhibition by leucine.
N113 (= N46) binding L-valine; mutation to A: Decreased feedback inhibition by valine/isoleucine.
I114 (= I47) binding L-valine

Sites not aligning to the query:

328 binding L-valine
331 G→D: Decreased feedback inhibition by leucine and valine/isoleucine.
332 binding L-valine
333 binding L-valine
340 F→A: Decreased feedback inhibition by valine/isoleucine.
345 Y→A: No effect.
346 binding L-valine; mutation N->A,H: Decreased feedback inhibition by leucine and increased feedback inhibition by valine/isoleucine.
347 binding L-valine

A0QUX7 Acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS; EC 2.2.1.6 from Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (Mycobacterium smegmatis) (see paper)
45% identity, 82% coverage: 20:174/188 of query aligns to 8:161/170 of A0QUX7

query
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A0QUX7

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K46 (≠ P58) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)

6vz8F Arabidopsis thaliana acetohydroxyacid synthase complex with valine bound (see paper)
48% identity, 85% coverage: 16:175/188 of query aligns to 1:157/159 of 6vz8F

query
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6vz8F

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binding valine: D13 (≠ H28), E14 (≠ N29), G16 (= G31), M17 (≠ V32), I18 (≠ L33), N31 (= N46), I32 (= I47)

2pc6A Crystal structure of putative acetolactate synthase- small subunit from nitrosomonas europaea (see paper)
41% identity, 83% coverage: 19:174/188 of query aligns to 3:157/164 of 2pc6A

query
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2pc6A

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binding calcium ion: N66 (≠ R82), L68 (= L84), V71 (≠ T87)

P9WKJ3 Putative acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS; EC 2.2.1.6 from Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) (see paper)
44% identity, 82% coverage: 20:174/188 of query aligns to 6:159/168 of P9WKJ3

query
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P9WKJ3

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K44 (≠ P58) modified: Isoglutamyl lysine isopeptide (Lys-Gln) (interchain with Q-Cter in protein Pup)

6vz8G Arabidopsis thaliana acetohydroxyacid synthase complex with valine bound (see paper)
45% identity, 84% coverage: 20:176/188 of query aligns to 4:159/159 of 6vz8G

query
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6vz8G

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binding valine: D12 (≠ H28), G15 (= G31), V16 (= V32), L17 (= L33), N30 (= N46), I31 (= I47), V36 (= V52)

O60086 Probable acetolactate synthase small subunit; Acetohydroxy-acid synthase small subunit; AHAS; ALS from Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast) (see paper)
32% identity, 87% coverage: 19:181/188 of query aligns to 70:271/289 of O60086

query
sites
O60086

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Sites not aligning to the query:

34 modified: Phosphoserine

6u9dL Saccharomyces cerevisiae acetohydroxyacid synthase (see paper)
30% identity, 90% coverage: 5:174/188 of query aligns to 22:240/255 of 6u9dL

query
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6u9dL

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binding adenosine-5'-triphosphate: N191 (≠ I125), F192 (= F126), V197 (= V131), D198 (= D132), I199 (≠ V133), K211 (≠ D145), R214 (≠ K148), R214 (≠ K148), R240 (= R174)

6wo1B Hybrid acetohydroxyacid synthase complex structure with cryptococcus neoformans ahas catalytic subunit and saccharomyces cerevisiae ahas regulatory subunit (see paper)
32% identity, 83% coverage: 19:174/188 of query aligns to 4:195/197 of 6wo1B

query
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6wo1B

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binding valine: E14 (≠ N29), G16 (= G31), L18 (= L33)

5yumA Crystallographic structures of ilvn.Val/ile complexes:conformational selectivity for feedback inhibition of ahass (see paper)
30% identity, 38% coverage: 21:91/188 of query aligns to 5:74/91 of 5yumA

query
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binding cobalt (ii) ion: H13 (≠ N29), D69 (≠ E86)
binding isoleucine: N12 (≠ H28), H13 (≠ N29), V16 (= V32), M17 (≠ L33), C36 (≠ V52)

5yppE Crystal structure of ilvn.Val-1a (see paper)
30% identity, 38% coverage: 21:91/188 of query aligns to 5:74/91 of 5yppE

query
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5yppE

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binding valine: H13 (≠ N29), M17 (≠ L33), N30 (= N46), V31 (≠ I47), C36 (≠ V52)

Query Sequence

>WP_012674812.1 NCBI__GCF_000021545.1:WP_012674812.1
MSEIKVIKERPQPEKKIGRHVITVKVQHNFGVLARITGLFAGRGYNIESLTVGRTHEPHI
ARITIVVEGDERVIEQIIKQLRKLIETLRVRDITDIPHIERELALIKIHTENDRTRDEIM
RLVNIFRAKVVDVSTDTYTVEITGDEDKIEAFISLIKPFGIKEMARTGTLAMVRESATSK
ILPGERFD

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory