Comparing WP_012675780.1 NCBI__GCF_000021565.1:WP_012675780.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
8j5qD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- translocation state (see paper)
41% identity, 84% coverage: 3:267/317 of query aligns to 343:610/611 of 8j5qD
Sites not aligning to the query:
8j5tD Cryo-em structure of mycobacterium tuberculosis oppabcd in the catalytic intermediate state (see paper)
40% identity, 83% coverage: 3:265/317 of query aligns to 343:608/608 of 8j5tD
Sites not aligning to the query:
8j5sD Cryo-em structure of mycobacterium tuberculosis oppabcd in the pre- catalytic intermediate state (see paper)
40% identity, 83% coverage: 3:265/317 of query aligns to 343:608/608 of 8j5sD
Sites not aligning to the query:
4fwiB Crystal structure of the nucleotide-binding domain of a dipeptide abc transporter (see paper)
39% identity, 97% coverage: 8:316/317 of query aligns to 3:307/310 of 4fwiB
Q8RDH4 Dipeptide transport ATP-binding protein DppD; EC 7.4.2.9 from Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (Thermoanaerobacter tengcongensis) (see paper)
38% identity, 97% coverage: 8:316/317 of query aligns to 4:318/326 of Q8RDH4
P0AAH4 Putrescine export system ATP-binding protein SapD from Escherichia coli (strain K12) (see paper)
32% identity, 98% coverage: 7:316/317 of query aligns to 2:323/330 of P0AAH4
7z18I E. Coli c-p lyase bound to a phnk abc dimer and atp (see paper)
35% identity, 80% coverage: 7:259/317 of query aligns to 2:247/250 of 7z18I
7z15I E. Coli c-p lyase bound to a phnk/phnl dual abc dimer and adp + pi (see paper)
35% identity, 80% coverage: 7:259/317 of query aligns to 2:247/253 of 7z15I
7z16I E. Coli c-p lyase bound to phnk/phnl dual abc dimer with amppnp and phnk e171q mutation (see paper)
35% identity, 80% coverage: 7:259/317 of query aligns to 2:247/250 of 7z16I
7ahhC Opua inhibited inward-facing, sbd docked (see paper)
38% identity, 70% coverage: 36:257/317 of query aligns to 45:264/382 of 7ahhC
Sites not aligning to the query:
7aheC Opua inhibited inward facing (see paper)
38% identity, 70% coverage: 36:257/317 of query aligns to 45:264/382 of 7aheC
Sites not aligning to the query:
7ahdC Opua (e190q) occluded (see paper)
38% identity, 69% coverage: 36:253/317 of query aligns to 45:260/260 of 7ahdC
Sites not aligning to the query:
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
32% identity, 79% coverage: 8:258/317 of query aligns to 1:243/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
32% identity, 79% coverage: 8:258/317 of query aligns to 2:244/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
32% identity, 79% coverage: 8:258/317 of query aligns to 2:244/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
32% identity, 79% coverage: 8:258/317 of query aligns to 2:244/344 of 6cvlD
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
32% identity, 79% coverage: 9:258/317 of query aligns to 7:231/353 of 1vciA
1f3oA Crystal structure of mj0796 atp-binding cassette (see paper)
34% identity, 72% coverage: 8:234/317 of query aligns to 1:223/232 of 1f3oA
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
34% identity, 73% coverage: 20:251/317 of query aligns to 23:243/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
33% identity, 70% coverage: 36:256/317 of query aligns to 22:238/242 of 3c4jA
Sites not aligning to the query:
>WP_012675780.1 NCBI__GCF_000021565.1:WP_012675780.1
MEGNSPPLLKVENLSKKYLIKKTLFHKEYFTAVDRVSFDINYGEILGVVGESGSGKSTIG
KLVLKLIQKDEGSILFKGKDIYSMNRKEEKIFRKESSVVFQDPRTSLNPRLTVYKIIEEP
LIVHGVERKEREERIIKAINDAGLDETFLSRYPSELSGGQRQRVAIARAIVLDPDLIVAD
EPTSALDVSVQLQIIKLLEKLKKQRNISLMFISHDLNVVGNIADRIVVLYRGKIMEKGNT
ADIIKNPKHPYTKILFDSLPPDHPSHRKDLKKIPEIEREDIKGGCLFYHRCPVAEDICRK
EPDIKKINGREVYCHFV
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory