SitesBLAST
Comparing WP_012707305.1 NCBI__GCF_000018545.1:WP_012707305.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
6thqB Crystal structure of branched-chain aminotransferase from thermophilic archaea thermoproteus uzoniensis with norvaline
30% identity, 92% coverage: 13:283/293 of query aligns to 9:282/301 of 6thqB
- active site: F37 (= F41), K156 (= K157), E190 (= E191), L214 (= L215)
- binding pyridoxal-5'-phosphate: R60 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), N195 (= N196), L214 (= L215), G216 (= G217), I217 (= I218), T218 (= T219), T254 (≠ N255)
- binding 2-[o-phosphonopyridoxyl]-amino-pentanoic acid: R60 (= R60), Y97 (= Y97), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), E194 (≠ S195), N195 (= N196), G216 (= G217), I217 (= I218), T218 (= T219), G253 (= G254), T254 (≠ N255), A255 (≠ Y256)
2ej0B Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase with pyridoxamine 5'-phosphate
32% identity, 87% coverage: 31:285/293 of query aligns to 25:288/305 of 2ej0B
- active site: F35 (= F41), G37 (= G43), K158 (= K157), E192 (= E191), L215 (= L215)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: R58 (= R60), Y163 (= Y162), E192 (= E191), G195 (≠ S194), E196 (≠ S195), L215 (= L215), G217 (= G217), I218 (= I218), T219 (= T219), G254 (= G254), T255 (≠ N255)
5mr0D Thermophilic archaeal branched-chain amino acid transaminases from geoglobus acetivorans and archaeoglobus fulgidus: biochemical and structural characterisation (see paper)
28% identity, 96% coverage: 12:291/293 of query aligns to 3:285/290 of 5mr0D
- active site: F32 (= F41), G34 (= G43), K150 (= K157), E183 (= E191), L206 (= L215)
- binding 3-[o-phosphonopyridoxyl]--amino-benzoic acid: R51 (= R60), G100 (≠ A113), L101 (≠ V114), K150 (= K157), Y154 (= Y162), E183 (= E191), G186 (≠ S194), D187 (≠ S195), L206 (= L215), I209 (= I218), T210 (= T219), G245 (= G254), T246 (≠ N255)
2ej3A Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with gabapentin
32% identity, 87% coverage: 31:285/293 of query aligns to 25:280/297 of 2ej3A
- active site: F35 (= F41), G37 (= G43), K150 (= K157), E184 (= E191), L207 (= L215)
- binding [1-(aminomethyl)cyclohexyl]acetic acid: G187 (≠ S194), G246 (= G254), T247 (≠ N255), A248 (≠ Y256)
- binding pyridoxal-5'-phosphate: R58 (= R60), K150 (= K157), Y155 (= Y162), E184 (= E191), G187 (≠ S194), L207 (= L215), G209 (= G217), I210 (= I218), T211 (= T219), G246 (= G254), T247 (≠ N255)
2eiyA Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with 4-methylvaleric acid
32% identity, 87% coverage: 31:285/293 of query aligns to 25:280/297 of 2eiyA
- active site: F35 (= F41), G37 (= G43), K150 (= K157), E184 (= E191), L207 (= L215)
- binding 4-methyl valeric acid: F35 (= F41), Y94 (= Y97), T247 (≠ N255), A248 (≠ Y256)
- binding pyridoxal-5'-phosphate: R58 (= R60), K150 (= K157), Y155 (= Y162), E184 (= E191), G187 (≠ S194), E188 (≠ S195), L207 (= L215), G209 (= G217), I210 (= I218), T211 (= T219), G246 (= G254), T247 (≠ N255)
1wrvA Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase
32% identity, 87% coverage: 31:285/293 of query aligns to 25:280/297 of 1wrvA
- active site: F35 (= F41), G37 (= G43), K150 (= K157), E184 (= E191), L207 (= L215)
- binding pyridoxal-5'-phosphate: R58 (= R60), K150 (= K157), Y155 (= Y162), E184 (= E191), G187 (≠ S194), L207 (= L215), G209 (= G217), I210 (= I218), T211 (= T219), T247 (≠ N255)
2ej2A Crystal structure of t.Th.Hb8 branched-chain amino acid aminotransferase complexed with n-(5'-phosphopyridoxyl)-l-glutamate
32% identity, 87% coverage: 31:285/293 of query aligns to 25:277/294 of 2ej2A
- active site: F35 (= F41), G37 (= G43), K147 (= K157), E181 (= E191), L204 (= L215)
- binding 4-[(1,3-dicarboxy-propylamino)-methyl]-3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridinium: R58 (= R60), Y94 (= Y97), Y152 (= Y162), E181 (= E191), G184 (≠ S194), E185 (≠ S195), L204 (= L215), G206 (= G217), I207 (= I218), T208 (= T219), T244 (≠ N255), A245 (≠ Y256)
1iyeA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase (see paper)
28% identity, 93% coverage: 12:284/293 of query aligns to 4:286/304 of 1iyeA
- active site: F33 (= F41), G35 (= G43), K156 (= K157), A157 (= A158), E190 (= E191), L214 (= L215)
- binding N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-glutamic acid: R56 (= R60), Y92 (= Y97), Y126 (≠ A133), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), E194 (≠ S195), N195 (= N196), L214 (= L215), G216 (= G217), I217 (= I218), T218 (= T219), G253 (= G254), T254 (≠ N255), A255 (≠ Y256)
1iydA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase (see paper)
28% identity, 93% coverage: 12:284/293 of query aligns to 4:286/304 of 1iydA
- active site: F33 (= F41), G35 (= G43), K156 (= K157), A157 (= A158), E190 (= E191), L214 (= L215)
- binding glutaric acid: Y92 (= Y97), Y126 (≠ A133), A255 (≠ Y256)
- binding pyridoxal-5'-phosphate: R56 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), E194 (≠ S195), L214 (= L215), G216 (= G217), I217 (= I218), T218 (= T219), T254 (≠ N255)
1i1mA Crystal structure of escherichia coli branched-chain amino acid aminotransferase. (see paper)
28% identity, 93% coverage: 12:284/293 of query aligns to 4:286/304 of 1i1mA
- active site: K156 (= K157)
- binding 4-methyl valeric acid: Y92 (= Y97), K156 (= K157), T254 (≠ N255), A255 (≠ Y256)
- binding pyridoxal-5'-phosphate: R56 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), E194 (≠ S195), L214 (= L215), G216 (= G217), I217 (= I218), T218 (= T219), G253 (= G254), T254 (≠ N255)
1i1lA Crystal structure of eschelichia coli branched-chain amino acid aminotransferase. (see paper)
28% identity, 93% coverage: 12:284/293 of query aligns to 4:286/304 of 1i1lA
- active site: K156 (= K157)
- binding 2-methylleucine: Y92 (= Y97), K156 (= K157), T254 (≠ N255), A255 (≠ Y256)
- binding pyridoxal-5'-phosphate: R56 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), G216 (= G217), I217 (= I218), T218 (= T219), T254 (≠ N255)
5e25A Crystal structure of branched-chain aminotransferase from thermophilic archaea geoglobus acetivorans complexed with alpha-ketoglutarate (see paper)
27% identity, 97% coverage: 9:291/293 of query aligns to 1:286/290 of 5e25A
- active site: F33 (= F41), G35 (= G43), K151 (= K157), E184 (= E191), L207 (= L215)
- binding 2-oxoglutaric acid: Y88 (= Y97), K151 (= K157), T247 (≠ N255), A248 (≠ Y256)
- binding pyridoxal-5'-phosphate: R52 (= R60), K151 (= K157), Y155 (= Y162), E184 (= E191), G187 (≠ S194), D188 (≠ S195), L207 (= L215), G209 (= G217), I210 (= I218), T211 (= T219), G246 (= G254), T247 (≠ N255)
4whxA X-ray crystal structure of an amino acid aminotransferase from burkholderia pseudomallei bound to the co-factor pyridoxal phosphate
30% identity, 93% coverage: 14:285/293 of query aligns to 10:290/306 of 4whxA
6h65C Crystal structure of the branched-chain-amino-acid aminotransferase from haliangium ochraceum
24% identity, 94% coverage: 10:283/293 of query aligns to 4:288/308 of 6h65C
- active site: F35 (= F41), K158 (= K157), E192 (= E191), L216 (= L215)
- binding pyridoxal-5'-phosphate: R60 (= R60), K158 (= K157), Y163 (= Y162), E192 (= E191), A196 (≠ S195), L216 (= L215), S218 (≠ G217), V219 (≠ I218), T220 (= T219), G256 (= G254), T257 (≠ N255)
6q8eA Crystal structure of branched-chain amino acid aminotransferase from thermobaculum terrenum in pmp-form (see paper)
28% identity, 85% coverage: 38:285/293 of query aligns to 31:288/307 of 6q8eA
- active site: F34 (= F41), K156 (= K157), E190 (= E191), L214 (= L215)
- binding 4'-deoxy-4'-aminopyridoxal-5'-phosphate: R59 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), S194 (= S195), C195 (≠ N196), L214 (= L215), S216 (≠ G217), I217 (= I218), T218 (= T219), G254 (= G254), T255 (≠ N255)
7neaA Crystal structure of branched-chain amino acid aminotransferase from thermobaculum terrenum (m3 mutant). (see paper)
28% identity, 79% coverage: 54:285/293 of query aligns to 53:288/309 of 7neaA
- active site: K156 (= K157), E190 (= E191), L214 (= L215)
- binding pyridoxal-5'-phosphate: R59 (= R60), K156 (= K157), Y161 (= Y162), E190 (= E191), G193 (≠ S194), S194 (= S195), L214 (= L215), S216 (≠ G217), I217 (= I218), T218 (= T219), T255 (≠ N255)
Sites not aligning to the query:
7p3tB Transaminase of gamma-proteobacterium (see paper)
27% identity, 95% coverage: 14:292/293 of query aligns to 7:286/299 of 7p3tB
- binding pyridoxal-5'-phosphate: R53 (= R60), K153 (≠ G159), R157 (≠ P163), E186 (= E191), S187 (≠ T192), A188 (≠ G193), A189 (≠ S194), S190 (= S195), G210 (= G217), I211 (= I218), T212 (= T219), T248 (≠ N255)
7z79B Crystal structure of aminotransferase-like protein from variovorax paradoxus
26% identity, 96% coverage: 13:292/293 of query aligns to 18:300/306 of 7z79B
- binding pyridoxal-5'-phosphate: W46 (≠ F41), R65 (= R60), N166 (≠ Y162), S202 (= S194), T203 (≠ S195), F222 (= F214), G224 (= G217), I225 (= I218), T226 (= T219), G261 (= G254), T262 (≠ N255)
6snlD (R)-selective amine transaminase from exophiala sideris (see paper)
27% identity, 98% coverage: 5:292/293 of query aligns to 21:311/320 of 6snlD
- active site: Y57 (≠ F41), K178 (≠ A158), E211 (= E191), L233 (= L215)
- binding pyridoxal-5'-phosphate: R76 (= R60), K178 (≠ A158), E211 (= E191), G214 (≠ S194), F215 (≠ S195), L233 (= L215), G235 (= G217), V236 (≠ I218), T237 (= T219), T273 (≠ N255)
4uugA The (r)-selective amine transaminase from aspergillus fumigatus with inhibitor bound (see paper)
25% identity, 97% coverage: 6:289/293 of query aligns to 22:310/320 of 4uugA
- active site: Y57 (≠ F41), K178 (≠ A158), E211 (= E191), L233 (= L215)
- binding 3-[o-phosphonopyridoxyl]--amino-benzoic acid: R76 (= R60), K178 (≠ A158), E211 (= E191), G214 (≠ S194), F215 (≠ S195), N216 (= N196), L233 (= L215), G235 (= G217), I236 (= I218), T237 (= T219), T272 (≠ G254), T273 (≠ N255), A274 (≠ Y256)
Query Sequence
>WP_012707305.1 NCBI__GCF_000018545.1:WP_012707305.1
MAVDTSPRSPTWTYVDGEWLSGNPPLIGPTSHAMWLGSTVFDGARWFDGIAPDLDLHCQR
VNRSAQALGLKPTMAAEEIEALTFEGVKKFDGKTALYVKPMYWGEHGSWSVVAVDPESTR
FALCLFEAPMGNAHAGSALTLSPFRRPTLECMPTDAKAGCLYPNNARILQEARSRGFDNA
LVRDMLGNIAETGSSNIFMVRDGVVFTPAANRTFLAGITRSRVIGLLREAGFEVIEATLT
MTDFEAADEMFTTGNYSKVVPVTRLDDRDLQPGPISAKTRDLYMDWAHSSGDV
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory