Comparing WP_012709371.1 NCBI__GCF_000018545.1:WP_012709371.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 9 hits to proteins with known functional sites (download)
1v72A Crystal structure of phenylserine aldolase from pseudomonas putida
50% identity, 99% coverage: 3:345/348 of query aligns to 7:338/345 of 1v72A
O50584 Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Pseudomonas sp. (strain NCIMB 10558) (see paper)
41% identity, 88% coverage: 3:309/348 of query aligns to 8:312/346 of O50584
5vyeB Crystal structure of l-threonine aldolase from pseudomonas putida
42% identity, 88% coverage: 3:309/348 of query aligns to 6:310/344 of 5vyeB
1jg8D Crystal structure of threonine aldolase (low-specificity)
31% identity, 44% coverage: 30:181/348 of query aligns to 31:179/344 of 1jg8D
Sites not aligning to the query:
1lw5B X-ray structure of l-threonine aldolase (low-specificity) in complex with glycine (see paper)
31% identity, 44% coverage: 30:181/348 of query aligns to 30:178/343 of 1lw5B
Sites not aligning to the query:
1lw4B X-ray structure of l-threonine aldolase (low-specificity) in complex with l-allo-threonine (see paper)
31% identity, 44% coverage: 30:181/348 of query aligns to 30:178/343 of 1lw4B
Sites not aligning to the query:
Q8RXU4 Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana (Mouse-ear cress) (see 2 papers)
28% identity, 43% coverage: 37:184/348 of query aligns to 41:189/358 of Q8RXU4
O07051 L-allo-threonine aldolase; L-allo-TA; L-allo-threonine acetaldehyde-lyase; EC 4.1.2.49 from Aeromonas jandaei (see paper)
25% identity, 91% coverage: 30:345/348 of query aligns to 32:329/338 of O07051
3wgbD Crystal structure of aeromonas jandaei l-allo-threonine aldolase (see paper)
26% identity, 83% coverage: 30:317/348 of query aligns to 30:307/324 of 3wgbD
Sites not aligning to the query:
>WP_012709371.1 NCBI__GCF_000018545.1:WP_012709371.1
MIFASDNWAGAHPAIAENLAAHSHGYVPAYGTSELDRKVEKRLSEIFEREVAVFFVGTGT
AANSLALASANRLGGVVFCHREAHVNVDECGAPEFFSHGARLSPVDGELGKMEAARLETG
IRRFPPEFVHGGQPMAVTLTQATESGTVYSLAEIEAIAAIAKSHKLPLHMDGARFANALV
SLDVMPAEMTWKRGVDLLSFGGTKNGCWCAEALILFDLSKAHDMHFLRKRSAQLFSKSRF
IAAQFDAYLAGDLWLDLARHSNTMARRLAEGISASPESRLAWAPDANEVFVILKNSAATR
LKQQGAVFYDWPVPHHLAGSLAEDEGLYRLVTSFATQAEDVDRFVASC
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory