SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012709792.1 NCBI__GCF_000018545.1:WP_012709792.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

Q9X1S1 D-glycerate 2-kinase; GCK; EC 2.7.1.165 from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) (see paper)
37% identity, 98% coverage: 3:416/422 of query aligns to 1:411/417 of Q9X1S1

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Q9X1S1
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Query Sequence

>WP_012709792.1 NCBI__GCF_000018545.1:WP_012709792.1
MALTDPRRFLTSLFEAAVVAADPYAAIRAHLPARPKGRTIVVGAGKAASQMAAAFERLWD
GPIEGAVVARHGPVEKCERIKVLQSAHPVPDEAGLVASSALLDLVKGLTADDLVVALISG
GGSALLPAPPNGLTLDDEMAVNKALLASGAPISAMNVVRKHVSRIKGGRLALAAAPARVV
SLVVSDVPGDNPAFVASGPTVSDLSSLEEAREIVSRYAMALPERVMAHLSADAARAPSPD
DAAFAGNEVHVIASASVSLEAAAARARESGIEAMILSDAIEGEARDIGRMHAALAREVAL
RGRPFSKPVVLLSGGETTVTISKDYGKGGRNSEFLLSLALDIDGVAGIDALAADTDGIDG
SEDNAGAFADGASVARMRAAGVDPRAHLARHDAWSAFSASGDLFVPGPTGTNVNDFRAML
VR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory