SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012709876.1 NCBI__GCF_000018545.1:WP_012709876.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

6j2lA Crystal structure of bi-functional enzyme (see paper)
47% identity, 83% coverage: 4:92/107 of query aligns to 112:200/200 of 6j2lA

query
sites
6j2lA
L
 
L
T
 
F
L
 
L
S
 
Y
D
 
Q
L
 
L
E
 
E
Q
 
Q
I
 
L
V
 
L
A
 
A
T
 
E
R
 
R
A
 
K
G
 
Y
A
 
A
A
 
D
P
 
P
E
 
E
D
 
T
S
 
S
W
 
Y
T
 
T
A
 
A
K
 
K
L
 
L
V
 
Y
A
 
A
A
 
S
G
 
G
Q
 
T
P
 
K
K
 
R
A
 
I
A
 
A
K
 
Q
K
 
K
L
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
 
E
T
 
T
V
 
A
I
 
L
A
 
A
A
 
A
V
 
T
S
 
V
G
 
H
D
 
D
R
 
R
K
 
F
N
 
E
L
 
L
I
 
T
D
 
N
E
|
E
S
 
A
A
 
S
D
|
D
L
 
L
L
 
M
Y
 
Y
H
 
H
L
 
L
M
 
L
V
 
V
V
 
L
L
 
L
N
 
Q
I
 
D
A
 
Q
A
 
D
V
 
L
P
 
D
L
 
L
Q
 
T
D
 
T
V
 
V
M
 
I
S
 
E
E
 
N
L
 
L
A
 
H
R
 
K
R
 
R

Sites not aligning to the query:

6j2lB Crystal structure of bi-functional enzyme (see paper)
40% identity, 83% coverage: 4:92/107 of query aligns to 105:185/185 of 6j2lB

query
sites
6j2lB
L
 
L
T
 
F
L
 
L
S
 
Y
D
 
Q
L
 
L
E
 
E
Q
 
Q
I
 
L
V
 
L
A
 
A
T
 
E
R
 
R
A
 
K
G
 
-
A
 
-
A
 
-
P
 
-
E
 
-
D
 
-
S
 
-
W
 
-
T
 
Y
A
 
A
K
 
D
L
 
L
V
 
Y
A
 
A
A
 
S
G
 
G
Q
 
T
P
 
K
K
 
R
A
 
I
A
 
A
K
 
Q
K
 
K
L
 
V
G
 
G
E
 
E
E
|
E
A
 
G
V
 
V
E
|
E
T
 
T
V
 
A
I
 
L
A
 
A
A
 
A
V
 
T
S
 
V
G
 
H
D
 
D
R
 
R
K
 
F
N
 
E
L
 
L
I
 
T
D
 
N
E
|
E
S
 
A
A
 
S
D
|
D
L
 
L
L
 
M
Y
 
Y
H
 
H
L
 
L
M
 
L
V
 
V
V
 
L
L
 
L
N
 
Q
I
 
D
A
 
Q
A
 
D
V
 
L
P
 
D
L
 
L
Q
 
T
D
 
T
V
 
V
M
 
I
S
 
E
E
 
N
L
 
L
A
 
H
R
 
K
R
 
R

Sites not aligning to the query:

Query Sequence

>WP_012709876.1 NCBI__GCF_000018545.1:WP_012709876.1
MTELTLSDLEQIVATRAGAAPEDSWTAKLVAAGQPKAAKKLGEEAVETVIAAVSGDRKNL
IDESADLLYHLMVVLNIAAVPLQDVMSELARRTSQSGLQEKANRQNP

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory