SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_012755776.1 NCBI__GCF_000023185.1:WP_012755776.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 3 hits to proteins with known functional sites (download)

2gtvX Nmr structure of monomeric chorismate mutase from methanococcus jannaschii (see paper)
28% identity, 88% coverage: 9:92/96 of query aligns to 5:92/104 of 2gtvX

query
sites
2gtvX
L
 
L
L
 
A
A
 
E
L
 
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R
A
 
K
S
 
K
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I
D
 
D
N
 
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D
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N
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K
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W
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P
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A
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K
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D
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E
L
 
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K
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Q
 
L
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G
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P
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N
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D
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P
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E
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E
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K
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Y
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I
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Y
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D
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K
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L
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C
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K
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D
 
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G
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L
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H
H
x
N
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K
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A

Sites not aligning to the query:

P0A9J8 Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli (strain K12)
32% identity, 96% coverage: 1:92/96 of query aligns to 1:90/386 of P0A9J8

query
sites
P0A9J8
M
 
M
T
 
T
S
 
S
T
 
E
F
 
N
P
 
P
H
 
-
E
 
-
L
 
L
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L
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A
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D
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L
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L
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L
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L
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T
L
 
L
A
 
G
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A
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Y
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L
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I
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I
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E
E
 
D
V
 
S
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V
R
 
L
H
 
T
H
x
Q
R
 
Q
A
 
A

1ecmB Atomic structure of the buried catalytic pocket of escherichia coli chorismate mutase
30% identity, 82% coverage: 9:87/96 of query aligns to 2:80/95 of 1ecmB

query
sites
1ecmB
L
 
L
L
 
L
A
 
A
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L
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R
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D
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K
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L
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L
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L
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A
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I
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A
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H
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Y
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L
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F
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Q
F
 
L
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I
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I
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E
E
 
D
V
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S
I
 
V

Sites not aligning to the query:

Query Sequence

>WP_012755776.1 NCBI__GCF_000023185.1:WP_012755776.1
MTSTFPHELLALRASIDNIDAALMHMLAERFRCTKAIGALKARQGLPASDPEREQSQIQR
LRSLASTSGLDPDFAEKFLTFTIDEVIRHHRAAAAR

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory