Comparing WP_012756381.1 NCBI__GCF_000023185.1:WP_012756381.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P04983 Ribose import ATP-binding protein RbsA; EC 7.5.2.7 from Escherichia coli (strain K12) (see paper)
42% identity, 99% coverage: 1:489/495 of query aligns to 1:488/501 of P04983
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 43% coverage: 9:223/495 of query aligns to 9:232/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 43% coverage: 9:223/495 of query aligns to 9:232/253 of 1g9xB
8k1oB Mycobacterial efflux pump, amppnp bound state
36% identity, 43% coverage: 9:223/495 of query aligns to 10:213/215 of 8k1oB
8k1pB Mycobacterial efflux pump, adp+vanadate bound state
36% identity, 43% coverage: 9:223/495 of query aligns to 8:211/213 of 8k1pB
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 45% coverage: 1:223/495 of query aligns to 14:230/378 of P69874
Sites not aligning to the query:
P07821 Iron(3+)-hydroxamate import ATP-binding protein FhuC; Ferric hydroxamate uptake protein C; Ferrichrome transport ATP-binding protein FhuC; Iron(III)-hydroxamate import ATP-binding protein FhuC; EC 7.2.2.16 from Escherichia coli (strain K12) (see 2 papers)
32% identity, 45% coverage: 3:223/495 of query aligns to 10:230/265 of P07821
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
28% identity, 48% coverage: 5:240/495 of query aligns to 3:238/241 of 4u00A
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 44% coverage: 10:228/495 of query aligns to 9:225/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 44% coverage: 10:228/495 of query aligns to 9:225/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 44% coverage: 10:228/495 of query aligns to 9:225/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 44% coverage: 10:228/495 of query aligns to 9:225/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
26% identity, 43% coverage: 10:223/495 of query aligns to 7:218/240 of 4ymuJ
2d62A Crystal structure of multiple sugar binding transport atp- binding protein
28% identity, 45% coverage: 3:223/495 of query aligns to 5:225/375 of 2d62A
7mdyC Lolcde nucleotide-bound
32% identity, 40% coverage: 20:217/495 of query aligns to 22:218/226 of 7mdyC
Sites not aligning to the query:
P75957 Lipoprotein-releasing system ATP-binding protein LolD; EC 7.6.2.- from Escherichia coli (strain K12) (see paper)
32% identity, 40% coverage: 20:217/495 of query aligns to 25:221/233 of P75957
7arlD Lolcde in complex with lipoprotein and adp (see paper)
32% identity, 40% coverage: 20:217/495 of query aligns to 22:218/222 of 7arlD
8wm7C Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
32% identity, 41% coverage: 19:223/495 of query aligns to 22:219/658 of 8wm7C
Sites not aligning to the query:
8w9mC Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
32% identity, 41% coverage: 19:223/495 of query aligns to 22:219/256 of 8w9mC
Sites not aligning to the query:
7v8iD Lolcd(e171q)e with bound amppnp in nanodiscs (see paper)
32% identity, 40% coverage: 20:217/495 of query aligns to 24:220/229 of 7v8iD
Sites not aligning to the query:
>WP_012756381.1 NCBI__GCF_000023185.1:WP_012756381.1
MTSALALAGITKSFPGVRALKGVSFSLQPGEIRALVGENGAGKSTLMKILSGAYSADEGR
IELFGEAVLDPTPAGMIARGVAVIYQELAQAPHLTVAENVLMGRLPCKGALIDWGEAKRR
TIEVIDRLGFDVDPTARIGTLSVAKRQMVEIAKALARNAKIIVLDEPSAVLAQAEIDQLF
RVVRQLARESGVAFVYISHRLREVFELSDTVTVLRDGTVIHNGPSNGLTTDDLIRSMVGR
EVGDVFPTRTPRIGEEALSARGISTPALLKNVSIHVRKGEIVGLFGLAGAGRTELLRAIY
GADPRGAGEVRINGAMASIGSPRAGISKGLGLVPEDRKTEGLFLIQSVGFNIMSASLAQI
VRFGLLSLRRERKIVNGLIERLRIRTPNAAAATQNLSGGNQQKCVLARLVSAGCEILLAD
EPTRGVDVGAKREIYDLLVELAEARGLAIVIASSELPEILGLCDRLYVLREGEVTAELDA
RTATEEDVMHFAALH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory