Comparing WP_012966615.1 NCBI__GCF_000025505.1:WP_012966615.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures
Found 20 (the maximum) hits to proteins with known functional sites (download)
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
62% identity, 99% coverage: 2:246/247 of query aligns to 4:253/253 of 1g9xB
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
62% identity, 99% coverage: 2:246/247 of query aligns to 4:253/254 of 1g6hA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
32% identity, 100% coverage: 1:246/247 of query aligns to 5:238/240 of 1ji0A
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
33% identity, 99% coverage: 2:246/247 of query aligns to 2:235/240 of 6mjpA
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 97% coverage: 7:246/247 of query aligns to 7:235/235 of 6mhzA
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 97% coverage: 7:246/247 of query aligns to 7:235/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 97% coverage: 7:246/247 of query aligns to 7:235/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
31% identity, 97% coverage: 7:246/247 of query aligns to 8:236/241 of 6mbnA
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
32% identity, 96% coverage: 2:239/247 of query aligns to 2:228/241 of 4u00A
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
31% identity, 97% coverage: 7:245/247 of query aligns to 7:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
31% identity, 97% coverage: 7:245/247 of query aligns to 7:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 96% coverage: 7:244/247 of query aligns to 7:233/233 of 6b8bA
2pmkA Crystal structures of an isolated abc-atpase in complex with tnp-adp (see paper)
29% identity, 92% coverage: 18:245/247 of query aligns to 21:237/243 of 2pmkA
Sites not aligning to the query:
2ff7A The abc-atpase of the abc-transporter hlyb in the adp bound state (see paper)
29% identity, 92% coverage: 18:245/247 of query aligns to 21:237/243 of 2ff7A
Sites not aligning to the query:
7sgrE Structure of hemolysin a secretion system hlyb/d complex (see paper)
29% identity, 92% coverage: 18:245/247 of query aligns to 479:695/700 of 7sgrE
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
29% identity, 96% coverage: 2:239/247 of query aligns to 3:230/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
29% identity, 96% coverage: 2:239/247 of query aligns to 3:230/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
29% identity, 96% coverage: 2:239/247 of query aligns to 3:230/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
29% identity, 96% coverage: 2:239/247 of query aligns to 3:230/242 of 2oljA
8dckA Structure of hemolysin a secretion system hlyb/d complex, atp-bound (see paper)
29% identity, 92% coverage: 18:245/247 of query aligns to 474:690/691 of 8dckA
Sites not aligning to the query:
>WP_012966615.1 NCBI__GCF_000025505.1:WP_012966615.1
MILRTFSLSKFFDGLKALDRVNIEVEEGKITLVIGPNGSGKTTLINVITGFYKADEGRVE
YKGEDITNKPPHELYKKGIVRTFQIPKPLKKLTVLENLLIARENPGEGIIGALTKAYIPK
EKESVEKAFEILEFLGIEHLWDEEAQNLSGGQLRLVEIGRALMSDAELFVMDEPLAGVAP
KLSHDILGRMRELCEIGKTFLIVEHRLDIVLEYVDKVYVMASGRIIAEGKGKEVIEKPEV
VEVYLGA
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory