Comparing WP_012967117.1 NCBI__GCF_000025465.1:WP_012967117.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 98% coverage: 5:254/255 of query aligns to 4:254/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
31% identity, 98% coverage: 5:253/255 of query aligns to 4:253/253 of 1g9xB
6mjpA Lptb(e163q)fgc from vibrio cholerae (see paper)
30% identity, 98% coverage: 5:254/255 of query aligns to 2:236/240 of 6mjpA
1ji0A Crystal structure analysis of the abc transporter from thermotoga maritima
31% identity, 100% coverage: 1:255/255 of query aligns to 2:240/240 of 1ji0A
6s8nB Cryo-em structure of lptb2fgc in complex with lipopolysaccharide (see paper)
32% identity, 98% coverage: 6:254/255 of query aligns to 3:236/238 of 6s8nB
6s8gA Cryo-em structure of lptb2fgc in complex with amp-pnp (see paper)
32% identity, 98% coverage: 6:254/255 of query aligns to 3:236/238 of 6s8gA
6mbnA Lptb e163q in complex with atp (see paper)
32% identity, 98% coverage: 6:254/255 of query aligns to 4:237/241 of 6mbnA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
30% identity, 93% coverage: 5:241/255 of query aligns to 1:223/240 of 4ymuJ
6mhzA Vanadate trapped cryo-em structure of e.Coli lptb2fg transporter (see paper)
32% identity, 97% coverage: 6:253/255 of query aligns to 3:235/235 of 6mhzA
4yerA Crystal structure of an abc transporter atp-binding protein (tm_1403) from thermotoga maritima msb8 at 2.35 a resolution
33% identity, 94% coverage: 3:242/255 of query aligns to 2:224/285 of 4yerA
6b89A E. Coli lptb in complex with adp and novobiocin (see paper)
32% identity, 97% coverage: 6:252/255 of query aligns to 3:234/234 of 6b89A
4p31A Crystal structure of a selenomethionine derivative of e. Coli lptb in complex with adp-magensium (see paper)
32% identity, 97% coverage: 6:252/255 of query aligns to 3:234/234 of 4p31A
6b8bA E. Coli lptb in complex with adp and a novobiocin derivative (see paper)
31% identity, 96% coverage: 6:251/255 of query aligns to 3:233/233 of 6b8bA
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
31% identity, 95% coverage: 2:242/255 of query aligns to 1:229/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
31% identity, 95% coverage: 2:242/255 of query aligns to 1:229/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
31% identity, 93% coverage: 5:242/255 of query aligns to 2:227/253 of 6z5uK
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 98% coverage: 4:254/255 of query aligns to 16:250/378 of P69874
Sites not aligning to the query:
1vciA Crystal structure of the atp-binding cassette of multisugar transporter from pyrococcus horikoshii ot3 complexed with atp (see paper)
28% identity, 97% coverage: 6:253/255 of query aligns to 7:230/353 of 1vciA
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 89% coverage: 20:245/255 of query aligns to 20:232/343 of P30750
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
28% identity, 95% coverage: 5:245/255 of query aligns to 3:229/242 of 3c4jA
>WP_012967117.1 NCBI__GCF_000025465.1:WP_012967117.1
MSQPLLSVSGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGKTTVFNCLTGFYKPTGG
IIMLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKT
PAFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQRRLEIARCMVTQPEILMLDEP
AAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVMGISDRIYVVNQGTPLANGTPEE
IRNNPDVIRAYLGEA
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory