Comparing WP_012969646.1 NCBI__GCF_000025485.1:WP_012969646.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 11 hits to proteins with known functional sites (download)
3tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2-amino- 6-oxopimelate and coenzyme a (see paper)
75% identity, 100% coverage: 1:273/273 of query aligns to 1:273/274 of 3tdtA
2tdtA Complex of tetrahydrodipicolinate n-succinyltransferase with 2- aminopimelate and coenzyme a (see paper)
75% identity, 100% coverage: 1:273/273 of query aligns to 1:273/274 of 2tdtA
1kgtA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with pimelate and succinyl-coa (see paper)
75% identity, 100% coverage: 1:273/273 of query aligns to 1:273/274 of 1kgtA
1kgqA Crystal structure of tetrahydrodipicolinate n-succinyltransferase in complex with l-2-aminopimelate and succinamide-coa (see paper)
75% identity, 100% coverage: 1:273/273 of query aligns to 1:273/274 of 1kgqA
3r8yA Structure of the bacillus anthracis tetrahydropicolinate succinyltransferase
40% identity, 34% coverage: 104:197/273 of query aligns to 77:171/203 of 3r8yA
8bpxy Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (see paper)
28% identity, 56% coverage: 66:218/273 of query aligns to 32:179/265 of 8bpxy
Sites not aligning to the query:
8befy Cryo-em structure of the arabidopsis thaliana i+iii2 supercomplex (ci membrane core) (see paper)
28% identity, 56% coverage: 66:218/273 of query aligns to 32:179/265 of 8befy
Sites not aligning to the query:
7ar7y Cryo-em structure of arabidopsis thaliana complex-i (open conformation) (see paper)
28% identity, 56% coverage: 66:218/273 of query aligns to 31:178/268 of 7ar7y
Sites not aligning to the query:
7aqqy Cryo-em structure of arabidopsis thaliana complex-i (membrane core) (see paper)
28% identity, 56% coverage: 66:218/273 of query aligns to 31:178/268 of 7aqqy
3r5bA Pseudomonas aeruginosa dapd (pa3666) in complex with l-2-aminopimelate (see paper)
31% identity, 41% coverage: 102:214/273 of query aligns to 179:284/321 of 3r5bA
Sites not aligning to the query:
3r5aA Pseudomonas aeruginosa dapd (pa3666) in complex with d-2-aminopimelate (see paper)
31% identity, 41% coverage: 102:214/273 of query aligns to 179:284/321 of 3r5aA
Sites not aligning to the query:
>WP_012969646.1 NCBI__GCF_000025485.1:WP_012969646.1
MSDQQNIILEAFERRAEITPRNVETHVRDAVQDVIERLDQGTLRVAEKRDGDWVVNEWVK
KAVLLSFRIEDNAFMKGGFTNYYDKVPSKYADANSREFREGGVRVVPPATARKGSYIASG
CVLMPSYVNIGAYVDSGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPVQAAPTIIED
NCFIGARSEIVEGVIVGEGAVISMGVYIGQSTKIYNRETGEITYGRVPPGAVVVSGNLPA
KDGSHSLYCAVIIKQVDERTRGKVGINELLRDI
Or try a new SitesBLAST search
SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory