Comparing WP_012975564.1 NCBI__GCF_000010725.1:WP_012975564.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
1g6hA Crystal structure of the adp conformation of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 86% coverage: 14:275/305 of query aligns to 4:253/254 of 1g6hA
1g9xB Characterization of the twinning structure of mj1267, an atp-binding cassette of an abc transporter (see paper)
34% identity, 86% coverage: 14:275/305 of query aligns to 4:253/253 of 1g9xB
4u00A Crystal structure of ttha1159 in complex with adp (see paper)
33% identity, 84% coverage: 13:267/305 of query aligns to 1:227/241 of 4u00A
P69874 Spermidine/putrescine import ATP-binding protein PotA; EC 7.6.2.11 from Escherichia coli (strain K12) (see 3 papers)
30% identity, 86% coverage: 5:267/305 of query aligns to 8:239/378 of P69874
Sites not aligning to the query:
3c4jA Abc protein artp in complex with atp-gamma-s
30% identity, 83% coverage: 14:267/305 of query aligns to 3:229/242 of 3c4jA
3c41J Abc protein artp in complex with amp-pnp/mg2+
30% identity, 83% coverage: 14:267/305 of query aligns to 3:229/242 of 3c41J
2olkA Abc protein artp in complex with adp-beta-s
30% identity, 83% coverage: 14:267/305 of query aligns to 3:229/242 of 2olkA
2oljA Abc protein artp in complex with adp/mg2+
30% identity, 83% coverage: 14:267/305 of query aligns to 3:229/242 of 2oljA
4ymuJ Crystal structure of an amino acid abc transporter complex with arginines and atps (see paper)
27% identity, 82% coverage: 14:263/305 of query aligns to 1:223/240 of 4ymuJ
5x40A Structure of a cbio dimer bound with amppcp (see paper)
32% identity, 85% coverage: 13:270/305 of query aligns to 3:234/280 of 5x40A
P30750 Methionine import ATP-binding protein MetN; EC 7.4.2.11 from Escherichia coli (strain K12) (see 3 papers)
31% identity, 83% coverage: 14:267/305 of query aligns to 1:232/343 of P30750
Sites not aligning to the query:
3tuzC Inward facing conformations of the metni methionine abc transporter: cy5 semet soak crystal form (see paper)
31% identity, 83% coverage: 14:267/305 of query aligns to 2:233/344 of 3tuzC
Sites not aligning to the query:
3tuiC Inward facing conformations of the metni methionine abc transporter: cy5 native crystal form (see paper)
31% identity, 83% coverage: 14:267/305 of query aligns to 2:233/344 of 3tuiC
6cvlD Crystal structure of the escherichia coli atpgs-bound metni methionine abc transporter in complex with its metq binding protein (see paper)
31% identity, 83% coverage: 14:267/305 of query aligns to 2:233/344 of 6cvlD
7d0aB Acinetobacter mlafedb complex in adp-vanadate trapped vclose conformation (see paper)
30% identity, 93% coverage: 12:295/305 of query aligns to 2:261/263 of 7d0aB
7d08B Acinetobacter mlafedb complex in atp-bound vtrans1 conformation (see paper)
30% identity, 93% coverage: 12:295/305 of query aligns to 2:261/263 of 7d08B
6z5uK Cryo-em structure of the a. Baumannii mlabdef complex bound to appnhp (see paper)
32% identity, 81% coverage: 14:260/305 of query aligns to 2:223/253 of 6z5uK
8wm7D Cryo-em structure of cyanobacterial nitrate/nitrite transporter nrtbcd in complex with signalling protein pii (see paper)
30% identity, 78% coverage: 14:252/305 of query aligns to 4:214/257 of 8wm7D
8w9mD Cryo-em structure of the cyanobacterial nitrate transporter nrtbcd in complex with atp (see paper)
30% identity, 78% coverage: 14:252/305 of query aligns to 2:212/256 of 8w9mD
5ws4A Crystal structure of tripartite-type abc transporter macb from acinetobacter baumannii (see paper)
31% identity, 81% coverage: 11:257/305 of query aligns to 1:224/650 of 5ws4A
>WP_012975564.1 NCBI__GCF_000010725.1:WP_012975564.1
MANPSKNPLPKKPLLEITGLTRRFGGLTAVNGLSLTVGEGELVSVIGPNGAGKTTLFNLI
SGLDAPDAGTVTFEGRDVTGLSAERLAELGLARSFQHGRVFGNLSVLDNVLVGAHTRLRA
VRPRIPVVGPLVELALALIRPASVRAEDERLRAEAKEIVALFGERLTLRLDKPVHSLSYA
NRRRVEIARALALHPRLLLLDEPTAGMNPTETAEMLEIIRGLKARGLTILLIEHKLDLVM
KLSDRVVVMDHGACIAEGLPAAVASDPAVIEAYLGHKAVGTANQDAGQDAGQDVERDAAR
IRVAH
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory