Comparing WP_012977172.1 NCBI__GCF_000010725.1:WP_012977172.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
P00348 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; HCDH; L-3-hydroxyacyl CoA dehydrogenase; Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; Short-chain 3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35 from Sus scrofa (Pig) (see paper)
32% identity, 37% coverage: 3:292/779 of query aligns to 27:312/314 of P00348
1f17A L-3-hydroxyacyl-coa dehydrogenase complexed with nadh (see paper)
31% identity, 37% coverage: 3:292/779 of query aligns to 4:289/293 of 1f17A
1f12A L-3-hydroxyacyl-coa dehydrogenase complexed with 3-hydroxybutyryl-coa (see paper)
31% identity, 37% coverage: 3:292/779 of query aligns to 4:289/293 of 1f12A
1f0yA L-3-hydroxyacyl-coa dehydrogenase complexed with acetoacetyl-coa and NAD+ (see paper)
31% identity, 37% coverage: 3:292/779 of query aligns to 4:289/291 of 1f0yA
Q16836 Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial; HCDH; Medium and short-chain L-3-hydroxyacyl-coenzyme A dehydrogenase; Short-chain 3-hydroxyacyl-CoA dehydrogenase; EC 1.1.1.35 from Homo sapiens (Human) (see 7 papers)
32% identity, 37% coverage: 3:292/779 of query aligns to 27:312/314 of Q16836
6aa8E Crystal structure of (s)-3-hydroxybutyryl-coenzymea dehydrogenase from clostridium acetobutylicum complexed with NAD+ (see paper)
30% identity, 37% coverage: 4:295/779 of query aligns to 1:281/281 of 6aa8E
4kugA Crystal structure of 3-hydroxybutylryl-coa dehydrogenase with NAD from clostridium butyricum
30% identity, 38% coverage: 3:295/779 of query aligns to 1:282/282 of 4kugA
4kuhA Crystal structure of 3-hydroxybutylryl-coa dehydrogenase with acetoacetyl-coa from clostridium butyricum
30% identity, 37% coverage: 3:291/779 of query aligns to 1:278/280 of 4kuhA
7o4uA Structure of the alpha subunit of mycobacterium tuberculosis beta- oxidation trifunctional enzyme in complex with oxidized nicotinamide adenine dinucleotide (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 316:597/711 of 7o4uA
8oqrA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-80 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/728 of 8oqrA
Sites not aligning to the query:
4b3iA Crystal structure of mycobacterium tuberculosis fatty acid beta- oxidation complex with coenzymea bound at the hydratase active sites (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 336:617/731 of 4b3iA
Sites not aligning to the query:
8pf8A Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-72 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/729 of 8pf8A
Sites not aligning to the query:
8oquA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-92 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 335:616/730 of 8oquA
Sites not aligning to the query:
8oqtA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-91
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/729 of 8oqtA
Sites not aligning to the query:
8oqnA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-53 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/729 of 8oqnA
Sites not aligning to the query:
8opvA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with resveratrol (fragment-b-h11) (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/729 of 8opvA
Sites not aligning to the query:
8opuA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with sulfamethoxazole (fragment-b-e1) (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 334:615/729 of 8opuA
Sites not aligning to the query:
8oqoA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-49 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 333:614/727 of 8oqoA
Sites not aligning to the query:
8oqsB Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-83 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 340:621/735 of 8oqsB
Sites not aligning to the query:
8oqlA Structure of mycobacterium tuberculosis beta-oxidation trifunctional enzyme in complex with fragment-m-1 (see paper)
33% identity, 37% coverage: 3:292/779 of query aligns to 333:614/728 of 8oqlA
Sites not aligning to the query:
>WP_012977172.1 NCBI__GCF_000010725.1:WP_012977172.1
MKIERAAVIGAGVMGAGIAAHFANAGIPCVLLDIPAKEGADRSAIARGAVAKMLKTDPAP
FMHPKNAKLITPGNLEDDLSLLADVDWIVEAVVENPAIKADLYKRIDPVRKAGSVVSSNT
STIPLAVLTEGQGEQFAKDFLITHFFNPPRYMRLLEIVGGAHTRPDAMAAIADVCDRRLG
KGVVHCKDTPGFIANRIGVLWIQAAVNAAVDLGLTVEEADAVGGRPMGIPKTGIFGLMDL
VGLDLMPHIAKSMSATLPAGDAYRGQMREHPVITKMIAEGYTGRKGKGGFYRINKTGGGK
VKESVNLRTGDYAPSEKARLDSVSAAGRDLRKLCEHPDKGGRFARRVLAQTLAYAASLVP
EIADSIVAVDEGMRLGYNWKQGPFELIDRLGTEWFAELCRAEGIPVPALVETAAGRPFYR
VEGGKLQHLTTAGVYDTVVRPDGVLLLSDIKRAAGKPVWKNGSASLWDIGDGVLCVEFTS
KMNAVDADIMAAYEKAMRLIGDGKGDWKALVIHNEADNFSVGANLGLALFALNIGLWPQI
EEMVEGGQRTYRALKYAPFPVVAAPSGMALGGGCEILLHSDHVQAHAETYVGLVEVGVGL
IPAWGGCTEMLARHQANPKAPRGPMPGTAKAFEIISTATVAKSAAEAKELLYFRATDGIT
MNRDRLLADAKAKALELAANYTPPEKTTSYVLAGPSAKAAMELAVEGFALQGKVTPHDKL
VCAALSEVLSGGEEADISKPVGEDHILRLEREAFMGLVRTGGTIDRIEHMLLTGKPLRN
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory