SitesBLAST
Comparing WP_013009655.1 NCBI__GCF_000025725.1:WP_013009655.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
6hulB Sulfolobus solfataricus tryptophan synthase ab complex (see paper)
46% identity, 91% coverage: 11:421/450 of query aligns to 4:412/416 of 6hulB
- binding pyridoxal-5'-phosphate: H103 (= H108), K104 (= K109), Q131 (= Q136), S220 (= S226), G255 (= G261), G256 (= G262), G257 (= G263), S258 (= S264), N259 (= N265), E371 (= E380), S400 (= S409), G401 (= G410)
- binding serine: K104 (= K109), T127 (= T132), G128 (= G133), A129 (= A134), G130 (= G135), W132 (= W137)
4qysB Trpb2 enzymes (see paper)
44% identity, 93% coverage: 3:419/450 of query aligns to 3:412/418 of 4qysB
- active site: K101 (= K109), E123 (= E131), S402 (= S409)
- binding (5-hydroxy-4,6-dimethylpyridin-3-yl)methyl dihydrogen phosphate: H100 (= H108), K101 (= K109), G252 (= G261), G253 (= G262), G254 (= G263), S255 (= S264), N256 (= N265), E373 (= E380), S402 (= S409)
4qysA Trpb2 enzymes (see paper)
44% identity, 93% coverage: 3:419/450 of query aligns to 3:402/408 of 4qysA
- active site: K108 (= K109), E130 (= E131), S392 (= S409)
- binding pyridoxal-5'-phosphate: H107 (= H108), K108 (= K109), G242 (= G261), G243 (= G262), G244 (= G263), S245 (= S264), N246 (= N265), E363 (= E380), S392 (= S409)
- binding phosphoserine: K108 (= K109), G132 (= G133), A133 (= A134), Q135 (= Q136), W136 (= W137), G316 (= G333), R318 (= R335), E363 (= E380)
5vm5D Engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9, with ser bound (see paper)
32% identity, 85% coverage: 34:416/450 of query aligns to 7:376/383 of 5vm5D
- active site: K82 (= K109), E104 (= E131), S369 (= S409)
- binding 2-{[(E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}prop-2-enoic acid: H81 (= H108), K82 (= K109), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), S185 (= S226), G227 (= G261), G229 (= G263), S230 (= S264), N231 (= N265), G296 (= G333), E343 (= E380), S369 (= S409)
5ixjD Tryptophan synthase beta-subunit from pyrococcus furiosus with l- threonine non-covalently bound in the active site (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:376/394 of 5ixjD
5t6mA Structure of the tryptophan synthase b-subunit from pyroccus furiosus with b-methyltryptophan non-covalently bound (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:376/383 of 5t6mA
7rnpA Engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9_h275e with 4-cl-trp non-covalently bound (see paper)
32% identity, 85% coverage: 34:416/450 of query aligns to 7:378/384 of 7rnpA
6am8B Engineered tryptophan synthase b-subunit from pyrococcus furiosus, pftrpb2b9 with trp bound as e(aex2) (see paper)
32% identity, 85% coverage: 34:416/450 of query aligns to 7:378/385 of 6am8B
- active site: K82 (= K109), E104 (= E131), S371 (= S409)
- binding [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-l-tryptophane: H81 (= H108), K82 (= K109), E104 (= E131), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), L161 (= L193), S185 (= S226), V187 (≠ L228), G227 (= G261), G228 (= G262), G229 (= G263), S230 (= S264), N231 (= N265), G298 (= G333), Y301 (= Y336), E345 (= E380), S371 (= S409), G372 (= G410)
- binding tryptophan: P12 (= P39), L169 (≠ V211), S274 (≠ M311), H275 (≠ T312)
6cutA Engineered holo trpb from pyrococcus furiosus, pftrpb7e6 with (2s,3s)- isopropylserine bound as the external aldimine (see paper)
33% identity, 82% coverage: 48:416/450 of query aligns to 17:378/385 of 6cutA
- binding (2S,3S)-3-hydroxy-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]-4-methylpentanoic acid (non-preferred name): H81 (= H108), K82 (= K109), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), S185 (= S226), G227 (= G261), G229 (= G263), S230 (= S264), N231 (= N265), G298 (= G333), E345 (= E380), S371 (= S409)
6cuzA Engineered trpb from pyrococcus furiosus, pftrpb7e6 with (2s,3r)- ethylserine bound as the amino-acrylate (see paper)
33% identity, 82% coverage: 48:416/450 of query aligns to 17:378/383 of 6cuzA
- binding (2E)-2-[(E)-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)amino]pent-2-enoic acid: H81 (= H108), K82 (= K109), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), S185 (= S226), G227 (= G261), G229 (= G263), S230 (= S264), N231 (= N265), G298 (= G333), E345 (= E380), S371 (= S409)
5t6mB Structure of the tryptophan synthase b-subunit from pyroccus furiosus with b-methyltryptophan non-covalently bound (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:378/386 of 5t6mB
1v8zA X-ray crystal structure of the tryptophan synthase b2 subunit from hyperthermophile, pyrococcus furiosus (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:378/386 of 1v8zA
- active site: K82 (= K109), E104 (= E131), S371 (= S409)
- binding pyridoxal-5'-phosphate: H81 (= H108), K82 (= K109), Q109 (= Q136), S185 (= S226), G227 (= G261), G228 (= G262), G229 (= G263), S230 (= S264), N231 (= N265), E345 (= E380), S371 (= S409), G372 (= G410)
5dw0A Trpb from pyrococcus furiosus with l-serine bound as the external aldimine (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:378/388 of 5dw0A
- active site: K82 (= K109), E104 (= E131), S371 (= S409)
- binding [3-hydroxy-2-methyl-5-phosphonooxymethyl-pyridin-4-ylmethyl]-serine: H81 (= H108), K82 (= K109), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), S185 (= S226), G227 (= G261), G229 (= G263), S230 (= S264), N231 (= N265), G298 (= G333), D300 (≠ R335), E345 (= E380), S371 (= S409)
5dw3A Tryptophan synthase beta-subunit from pyrococcus furiosus with product l-tryptophan non-covalently bound in the active site (see paper)
33% identity, 82% coverage: 49:416/450 of query aligns to 18:377/383 of 5dw3A
- active site: K82 (= K109), E104 (= E131), S370 (= S409)
- binding tryptophan: K82 (= K109), E104 (= E131), T105 (= T132), G106 (= G133), A107 (= A134), Q109 (= Q136), H110 (≠ W137), S185 (= S226), G228 (= G262), Y300 (= Y336)
5ey5B Lbcats
33% identity, 76% coverage: 73:416/450 of query aligns to 47:378/383 of 5ey5B
- binding pyridoxal-5'-phosphate: H81 (= H108), K82 (= K109), Q109 (= Q136), S185 (= S226), G227 (= G261), G229 (= G263), S230 (= S264), N231 (= N265), E345 (= E380), S371 (= S409), G372 (= G410)
5tciH Crystal structure of tryptophan synthase from m. Tuberculosis - brd4592-bound form (see paper)
29% identity, 86% coverage: 38:423/450 of query aligns to 27:401/406 of 5tciH
- active site: K98 (= K109), E120 (= E131), S387 (= S409)
- binding (2R,3S,4R)-3-(2'-fluoro[1,1'-biphenyl]-4-yl)-4-(hydroxymethyl)azetidine-2-carbonitrile: P28 (= P39), L31 (≠ M42), Y197 (= Y222), F199 (≠ L224), P205 (vs. gap), F208 (vs. gap), H291 (≠ T312)
6usaB Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and gsk1-bound form (see paper)
29% identity, 86% coverage: 38:423/450 of query aligns to 26:400/404 of 6usaB
- active site: K97 (= K109), E119 (= E131), S386 (= S409)
- binding 2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]acrylic acid: H96 (= H108), K97 (= K109), T120 (= T132), G121 (= G133), A122 (= A134), G123 (= G135), Q124 (= Q136), H125 (≠ W137), T200 (≠ S226), G242 (= G261), G244 (= G263), S245 (= S264), N246 (= N265), G313 (= G333), E360 (= E380), S386 (= S409)
- binding (3R,4R)-4-[4-(2-Chlorophenyl)piperazin-1-yl]-1,1-dioxothiolan-3-ol: F184 (≠ V211), W187 (≠ A214), Y196 (= Y222), F198 (≠ L224), G203 (vs. gap), P204 (vs. gap), F207 (vs. gap), H290 (≠ T312), G291 (≠ P313)
6dweB Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and brd0059-bound form
29% identity, 86% coverage: 38:423/450 of query aligns to 26:400/404 of 6dweB
- active site: K97 (= K109), E119 (= E131), S386 (= S409)
- binding (2R,3S,4R)-3-(2',6'-difluoro-4'-methyl[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile: F184 (≠ V211), Y196 (= Y222), F198 (≠ L224), P204 (vs. gap), F207 (vs. gap), H290 (≠ T312)
- binding 2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]acrylic acid: H96 (= H108), K97 (= K109), T120 (= T132), G121 (= G133), A122 (= A134), G123 (= G135), Q124 (= Q136), H125 (≠ W137), T200 (≠ S226), G242 (= G261), G244 (= G263), S245 (= S264), N246 (= N265), G313 (= G333), E360 (= E380), S386 (= S409)
6uapB Crystal structure of tryptophan synthase from m. Tuberculosis - open form with brd6309 bound
29% identity, 86% coverage: 38:423/450 of query aligns to 26:400/405 of 6uapB
- active site: K97 (= K109), E119 (= E131), S386 (= S409)
- binding (2R,3S,4R)-3-(4'-chloro-2',6'-difluoro[1,1'-biphenyl]-4-yl)-4-(fluoromethyl)azetidine-2-carbonitrile: I180 (= I207), N181 (≠ S208), F184 (≠ V211), Y196 (= Y222), F198 (≠ L224), P204 (vs. gap), F207 (vs. gap), H290 (≠ T312)
6u6cB Crystal structure of tryptophan synthase from m. Tuberculosis - aminoacrylate- and gsk2-bound form (see paper)
29% identity, 86% coverage: 38:423/450 of query aligns to 27:401/405 of 6u6cB
- active site: K98 (= K109), E120 (= E131), S387 (= S409)
- binding 2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]acrylic acid: H97 (= H108), K98 (= K109), T121 (= T132), G122 (= G133), A123 (= A134), Q125 (= Q136), H126 (≠ W137), T201 (≠ S226), G243 (= G261), G245 (= G263), S246 (= S264), N247 (= N265), G314 (= G333), E361 (= E380), S387 (= S409)
- binding 1-(2-fluorobenzene-1-carbonyl)-N-methyl-2,3-dihydro-1H-indole-5-sulfonamide: F185 (≠ V211), W188 (≠ A214), Y197 (= Y222), F199 (≠ L224), G204 (vs. gap), P205 (vs. gap), H291 (≠ T312), G292 (≠ P313)
Sites not aligning to the query:
Query Sequence
>WP_013009655.1 NCBI__GCF_000025725.1:WP_013009655.1
MKKIYLNPSDMPTQWYNILADLPQLAPPISPATGKPATPEEMLAIFPGPILEQEMSAQRH
IDIPEEVLDILTIWRPSPVVRAERLEKALGTKCRIYYKYEGGSPAGSHKTNTAVPQAYYN
KISGINKLTTETGAGQWGSALSYATSIFEMSLRVYMVKVSYFQKPYRKSFMNMFGAEVIP
SPSNLTNAGRAELERDPQSHGSLGLAISEAVEEAASNSDTNYALGSVLNHVIIHQSLIGL
EAKKQMEIGGDYPDMVFASCGGGSNFGGIAAPFVKDKMDGKKVECVAMEPISCPTLTKGE
YTFDYGDVGKMTPIMQMYTLGHDFMPPAIHAGGLRYHGDSPIVSAMYKQGLIDARSIGQL
DVFKYGTLFAKTEGIIPAPESSHAIAGAAKEALACDERGESKSLLFCLSGHGHFDMASYD
AYYEGKLEDYSYPEEEIEKSLRSLPKVDLD
Or try a new SitesBLAST search
SitesBLAST's Database
SitesBLAST's database includes
(1) SwissProt
entries with experimentally-supported functional features;
and (2) protein structures with bound ligands, from the
BioLip database.
by Morgan Price,
Arkin group
Lawrence Berkeley National Laboratory