SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013010470.1 NCBI__GCF_000025725.1:WP_013010470.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 2 hits to proteins with known functional sites (download)

1lbmA Crystal structure of phosphoribosyl anthranilate isomerase (prai) in complex with reduced 1-(o-carboxyphenylamino)-1-deoxyribulose 5- phosphate (rcdrp) (see paper)
39% identity, 98% coverage: 3:174/176 of query aligns to 4:192/194 of 1lbmA

query
sites
1lbmA
V
 
V
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K
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I
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C
G
 
G
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I
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D
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V
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F
Y
 
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P
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K
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S
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K
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R
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Y
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I
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S
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P
E
 
E
Q
 
D
A
 
A
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R
A
 
R
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I
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A
 
E
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L
N
 
P
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P
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F
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F
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R
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V
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G
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V
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F
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N
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-
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E
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E
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P
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E
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K
Y
 
I
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D
F
 
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A
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S
Y
 
Y
V
 
V
Q
 
Q
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A
A
 
V
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Q
T
 
-
S
 
-
E
 
-
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-
Q
 
-
I
 
-
L
 
L
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x
H
G
 
G
S
 
E
E
 
E
R
 
-
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P
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I
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E
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L
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C
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K
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A
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A
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N
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E
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D
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M
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R
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A
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E
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Y
 
T
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D
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W
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S
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L
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I
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L
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P
Y
 
Y
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R
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F
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Y
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L
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E
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D
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V
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A
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D
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H
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D
K
 
S
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I
K
 
K
V
 
M
F
 
F
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I
N
 
K
N
 
N
A
 
A
K
 
K

1nsjA Crystal structure of phosphoribosyl anthranilate isomerase from thermotoga maritima (see paper)
38% identity, 98% coverage: 3:174/176 of query aligns to 4:203/205 of 1nsjA

query
sites
1nsjA
V
 
V
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K
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I
C
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C
G
 
G
I
 
I
K
 
T
T
 
N
P
 
L
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E
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D
A
 
A
E
 
L
L
 
F
A
 
S
C
 
V
E
 
E
H
 
S
G
 
G
A
 
A
D
 
D
A
 
A
I
 
V
G
 
G
V
 
F
V
 
V
A
 
F
Y
 
Y
K
 
P
K
 
K
S
 
S
K
 
K
R
 
R
Y
 
Y
V
 
I
A
 
S
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P
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E
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D
A
 
A
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-
E
 
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E
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E
 
E
P
 
K
Y
 
I
A
 
L
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D
F
 
V
A
 
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Y
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L
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A
A
 
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Q
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E
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P
L
 
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E
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L
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D
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T
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F
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D
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W
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E
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A
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I
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D
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V
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V
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R
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P
F
 
F
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A
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V
D
 
D
V
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V
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S
G
 
G
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V
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E
T
 
A
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F
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P
G
 
G
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K
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K
D
 
D
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H
E
 
D
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S
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I
K
 
K
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M
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F
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I
N
 
K
N
 
N
A
 
A
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K

Query Sequence

>WP_013010470.1 NCBI__GCF_000025725.1:WP_013010470.1
MFVKICGIKTPEMAELACEHGADAIGVVAYKKSKRYVAPEQAKAIKNAINGRCPLVVVSV
SKEDCEPYASFADYVQADDANTSETQILSGSERPDGIFRYFLYDASRGAGLRSDYPDWIE
EYSDRLILAGGLDSDNVIDVIEKYKPFGVDVSSGVETDGEKDIEKIKVFINNAKTN

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory