SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013010475.1 NCBI__GCF_000025725.1:WP_013010475.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

8b01B Cryo-em structure of the tripartite atp-independent periplasmic (trap) transporter siaqm from photobacterium profundum in a nanodisc (see paper)
28% identity, 21% coverage: 178:312/632 of query aligns to 60:192/427 of 8b01B

query
sites
8b01B
F
 
F
V
 
V
L
 
L
F
 
T
G
 
G
A
 
H
F
 
L
L
 
M
E
 
N
K
 
S
S
 
A
G
 
G
A
 
I
Q
 
T
K
 
E
F
 
R
F
 
I
I
 
F
D
 
N
L
 
F
P
 
A
L
 
K
A
 
A
A
 
M
V
 
V
G
 
G
H
 
H
K
 
I
T
 
T
G
 
G
G
 
S
P
 
L
A
 
G
K
 
H
V
 
V
A
 
N
V
 
I
I
 
L
A
 
A
S
 
S
A
 
L
I
 
L
F
 
F
G
x
S
S
 
G
I
 
M
S
|
S
G
|
G
S
 
S
A
 
A
I
 
L
A
 
A
N
 
D
T
 
A
V
 
G
S
 
G
T
 
L
G
 
G
A
 
Q
F
 
L
T
 
E
I
 
I
P
 
K
L
 
S
M
 
M
K
 
R
K
 
D
A
 
A
G
 
K
F
 
Y
K
 
D
P
 
D
H
 
D
V
 
F
A
 
A
G
 
G
A
 
G
V
 
L
E
 
T
P
 
A
A
 
A
A
 
S
S
 
C
I
 
I
G
 
I
G
|
G
M
 
P
F
 
L
M
x
V
P
|
P
P
|
P
I
 
S
M
 
I
G
 
P
A
 
L
G
 
-
G
 
-
F
 
V
I
 
I
M
 
Y
A
 
G
E
 
V
L
 
V
T
 
S
E
 
N
V
 
T
P
 
S
Y
 
I
Q
 
G
T
 
A
I
 
L
M
 
F
L
 
L
V
 
A
A
 
G
I
 
A
F
 
I
P
 
P
A
 
G
L
 
L
M
 
L
Y
 
C
F
 
C
F
 
I
S
 
A
V
 
L
F
 
C
V
 
I
M
 
M
V
 
T
H
 
Y
Y
 
F
E
 
I
A
 
A
K
 
K

Sites not aligning to the query:

Query Sequence

>WP_013010475.1 NCBI__GCF_000025725.1:WP_013010475.1
MYADLKKFEKIIFDIAAVFLVLFYSYAALIKPVSTEYHKGIYVFITYFLIFLVYKSKNKW
LRIIDYILILAACVPVLYFMIFFVDLNYRAGAETIMDQWMSVVGVLMGIEVARRAVGSVF
VLLGGAMILYGVFGDKVPDLFQHSGGNFLDTISVAIFLTNDGVFGIMADVLATYVLLFVL
FGAFLEKSGAQKFFIDLPLAAVGHKTGGPAKVAVIASAIFGSISGSAIANTVSTGAFTIP
LMKKAGFKPHVAGAVEPAASIGGMFMPPIMGAGGFIMAELTEVPYQTIMLVAIFPALMYF
FSVFVMVHYEAKLHNIRGEKSAVSPKQIFKEGWHYVMPLVLITILMIMGKSPGYSAVVGM
LSCVIITWTRGSKYVSIFTIVLLGVLFADSVKGFDSVNEMSAGLSTLVTFGFAALRGELR
INLKEFIEASRNGTESSLKIGATVGVIGIIISMLTYSGLTLTFSSIIIHLAAGKLWLTIL
LIALASLVLGMGVPVTAAYLITAVVAVPALTELGVSPIAAHMVVYWLSQDSNITPPVCIA
AFAGATIAKANMWLTAFNAFKFAKFLYLGPFLFAYVPAFSMRHYLPGSDSYEWFSPTTIT
LTFIAVIIGNYIFSYILSFHWIVLFKKKKQPA

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory