SitesBLAST – Find functional sites

 

SitesBLAST

Comparing WP_013011688.1 NCBI__GCF_000025725.1:WP_013011688.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.

Or try Sites on a Tree, PaperBLAST, Conserved Domains, or compare to all protein structures

Found 1 hits to proteins with known functional sites (download)

3al0C Crystal structure of the glutamine transamidosome from thermotoga maritima in the glutamylation state. (see paper)
36% identity, 89% coverage: 10:95/97 of query aligns to 7:92/564 of 3al0C

query
sites
3al0C
V
 
V
K
 
L
H
 
H
I
 
L
A
 
E
N
 
N
L
 
L
A
 
A
R
 
R
L
 
L
S
 
E
F
 
L
D
 
S
E
 
E
A
 
D
G
 
Q
A
 
R
E
 
E
K
 
S
L
 
L
K
 
M
D
 
K
D
 
D
L
 
F
N
 
Q
S
 
E
I
 
I
L
 
L
G
 
D
Y
 
Y
V
 
V
D
 
E
K
 
L
L
 
L
N
 
N
E
 
E
L
 
V
D
 
D
T
 
V
S
 
E
D
 
G
V
 
V
E
 
E
P
 
P
T
 
M
S
 
Y
H
 
T
T
 
P
L
 
V
D
 
E
I
 
D
Y
 
S
T
 
A
V
 
K
T
 
L
R
 
R
P
 
-
D
 
-
K
 
K
A
 
G
E
 
D
P
 
P
S
 
R
L
 
F
T
 
F
N
 
E
E
 
M
E
 
R
A
 
D
L
 
L
-
 
I
-
 
K
A
 
K
N
 
N
A
 
F
P
 
P
Q
 
E
S
 
E
E
 
K
N
 
D
A
 
G
H
 
H
F
 
I
K
 
K
V
 
V
P
 
P
K
 
G
V
 
I

Sites not aligning to the query:

Query Sequence

>WP_013011688.1 NCBI__GCF_000025725.1:WP_013011688.1
MSETISIKDVKHIANLARLSFDEAGAEKLKDDLNSILGYVDKLNELDTSDVEPTSHTLDI
YTVTRPDKAEPSLTNEEALANAPQSENAHFKVPKVME

Or try a new SitesBLAST search

SitesBLAST's Database

SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory