Comparing WP_013090145.1 NCBI__GCF_000092885.1:WP_013090145.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 16 hits to proteins with known functional sites (download)
P0A9J8 Bifunctional chorismate mutase/prephenate dehydratase; Chorismate mutase-prephenate dehydratase; P-protein; EC 5.4.99.5; EC 4.2.1.51 from Escherichia coli (strain K12)
34% identity, 97% coverage: 9:356/359 of query aligns to 7:376/386 of P0A9J8
2qmxA The crystal structure of l-phe inhibited prephenate dehydratase from chlorobium tepidum tls (see paper)
38% identity, 73% coverage: 95:355/359 of query aligns to 5:273/278 of 2qmxA
3mwbA The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
36% identity, 74% coverage: 92:358/359 of query aligns to 1:277/306 of 3mwbA
3mwbB The crystal structure of prephenate dehydratase in complex with l-phe from arthrobacter aurescens to 2.0a
37% identity, 73% coverage: 96:358/359 of query aligns to 5:274/303 of 3mwbB
6vh5D Crystal structure of prephenate dehydratase from brucella melitensis biovar abortus 2308 in complex with phenylalanine
33% identity, 74% coverage: 90:355/359 of query aligns to 5:276/282 of 6vh5D
7am0B Gqqa- a novel type of quorum quenching acylases (see paper)
33% identity, 73% coverage: 95:356/359 of query aligns to 5:270/278 of 7am0B
3luyA Putative chorismate mutase from bifidobacterium adolescentis
25% identity, 74% coverage: 93:357/359 of query aligns to 5:285/326 of 3luyA
7alzA Gqqa- a novel type of quorum quenching acylases (see paper)
36% identity, 38% coverage: 219:356/359 of query aligns to 46:186/194 of 7alzA
5j6fA Crystal structure of dah7ps-cm complex from geobacillus sp. With prephenate (see paper)
29% identity, 31% coverage: 6:116/359 of query aligns to 1:112/352 of 5j6fA
Sites not aligning to the query:
P39912 Protein AroA(G); EC 2.5.1.54; EC 5.4.99.5 from Bacillus subtilis (strain 168) (see paper)
33% identity, 23% coverage: 6:89/359 of query aligns to 3:86/358 of P39912
Sites not aligning to the query:
5gmuB Crystal structure of chorismate mutase like domain of bifunctional dahp synthase of bacillus subtilis in complex with chlorogenic acid (see paper)
33% identity, 23% coverage: 6:89/359 of query aligns to 2:85/87 of 5gmuB
6al9B Crystal structure of chorismate mutase from helicobacter pylori in complex with prephenate
31% identity, 24% coverage: 5:91/359 of query aligns to 1:85/91 of 6al9B
6al9A Crystal structure of chorismate mutase from helicobacter pylori in complex with prephenate
30% identity, 24% coverage: 6:91/359 of query aligns to 1:84/90 of 6al9A
3nvtA 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7- phosphoheptulonate synthase/chorismate mutase (aroa) from listeria monocytogenes egd-e (see paper)
26% identity, 33% coverage: 12:128/359 of query aligns to 2:109/345 of 3nvtA
Sites not aligning to the query:
3tfcA 1.95 angstrom crystal structure of a bifunctional 3-deoxy-7- phosphoheptulonate synthase/chorismate mutase (aroa) from listeria monocytogenes egd-e in complex with phosphoenolpyruvate (see paper)
26% identity, 33% coverage: 12:128/359 of query aligns to 1:108/343 of 3tfcA
Sites not aligning to the query:
1ecmB Atomic structure of the buried catalytic pocket of escherichia coli chorismate mutase
31% identity, 26% coverage: 9:101/359 of query aligns to 2:95/95 of 1ecmB
>WP_013090145.1 NCBI__GCF_000092885.1:WP_013090145.1
MDDELNTRLKPLRDRIDALDAQLIALLNQRASVALEVGEVKKHFNAPVFRPEREMQVIAR
LQEMSAGPLADEHISAIWREIMAASRALERSIKAAYLGPVGTYSEQAMHEYFGQSIEGLP
CPSIDEVFRSVEAGAADYGVVPVENSTEGAVSRTLDLLLQTQLTIGGELALPIHHNLLTQ
NGLVGVTRVCAHAQALAQCQRWLSTNAPHLERQAVSSNAEAARMASEDPTVAAIAGDRAA
IHYGLQVTNALIQDDPHNRTRFVMIGKEPTGPSGYDQTSLIVSVANEPGAMVKLLEPLAR
HGVSMTRFESRPARVGTWEYYFYIDVEGHRDDPAVAAALAGLGEKAAFLKILGSYPRAR
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory