Comparing WP_013092162.1 NCBI__GCF_000092885.1:WP_013092162.1 to proteins with known functional sites using BLASTp with E ≤ 0.001.
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Found 20 (the maximum) hits to proteins with known functional sites (download)
Q88JU3 3-dehydroshikimate dehydratase; DSD; EC 4.2.1.118 from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / CFBP 8728 / NCIMB 11950 / KT2440) (see paper)
58% identity, 100% coverage: 1:628/629 of query aligns to 1:626/635 of Q88JU3
5hmqD Xylose isomerase-like tim barrel/4-hydroxyphenylpyruvate dioxygenase fusion protein
58% identity, 100% coverage: 1:628/629 of query aligns to 3:623/624 of 5hmqD
7xntA Crystal structure of pfhppd-y13161 complex
31% identity, 53% coverage: 283:616/629 of query aligns to 2:329/341 of 7xntA
Sites not aligning to the query:
1cjxA Crystal structure of pseudomonas fluorescens hppd (see paper)
30% identity, 51% coverage: 294:616/629 of query aligns to 8:333/352 of 1cjxA
Sites not aligning to the query:
7x8eA Crystal structure of pfhppd-y13287 complex
31% identity, 53% coverage: 283:616/629 of query aligns to 1:325/341 of 7x8eA
Sites not aligning to the query:
7xntC Crystal structure of pfhppd-y13161 complex
30% identity, 53% coverage: 283:616/629 of query aligns to 1:313/320 of 7xntC
Sites not aligning to the query:
7yvvA Acmp1, r-4-hydroxymandelate synthase
29% identity, 50% coverage: 313:627/629 of query aligns to 23:334/335 of 7yvvA
2r5vA Hydroxymandelate synthase crystal structure (see paper)
28% identity, 51% coverage: 298:616/629 of query aligns to 7:332/346 of 2r5vA
Sites not aligning to the query:
O52791 4-hydroxymandelate synthase; HMS; HmaS; 4-hydroxyphenylpyruvate dioxygenase II; EC 1.13.11.46 from Amycolatopsis orientalis (Nocardia orientalis) (see paper)
28% identity, 51% coverage: 298:616/629 of query aligns to 8:334/357 of O52791
1t47A Structure of fe2-hppd bound to ntbc (see paper)
27% identity, 41% coverage: 357:616/629 of query aligns to 80:348/362 of 1t47A
Sites not aligning to the query:
3zgjB S221m v223f y359a mutant of 4-hydroxymandelate synthase from streptomyces coelicolor (see paper)
25% identity, 54% coverage: 291:629/629 of query aligns to 3:341/343 of 3zgjB
5yy6A Crystal structure of arabidopsis thaliana hppd truncated mutant complexed with benquitrione (see paper)
29% identity, 41% coverage: 351:607/629 of query aligns to 94:346/371 of 5yy6A
Sites not aligning to the query:
5ywkA Crystal structure of arabidopsis thaliana hppd complexed with benquitrione-methyl (see paper)
29% identity, 41% coverage: 351:607/629 of query aligns to 93:346/372 of 5ywkA
Sites not aligning to the query:
P93836 4-hydroxyphenylpyruvate dioxygenase; 4-hydroxyphenylpyruvic acid oxidase; 4HPPD; HPD; HPPDase; EC 1.13.11.27 from Arabidopsis thaliana (Mouse-ear cress) (see paper)
28% identity, 41% coverage: 353:607/629 of query aligns to 130:400/445 of P93836
1tg5A Crystal structures of plant 4-hydroxyphenylpyruvate dioxygenases complexed with das645 (see paper)
29% identity, 41% coverage: 351:609/629 of query aligns to 94:351/371 of 1tg5A
Sites not aligning to the query:
8hxgA Crystal structure of athppd-y14116 complex
29% identity, 41% coverage: 351:607/629 of query aligns to 94:351/380 of 8hxgA
Sites not aligning to the query:
8hx4A Crystal structure of athppd-y18549 complex
29% identity, 41% coverage: 351:607/629 of query aligns to 94:351/382 of 8hx4A
Sites not aligning to the query:
7x67A Crystal structure of athppd-y18406 complex (see paper)
29% identity, 41% coverage: 351:607/629 of query aligns to 94:351/380 of 7x67A
Sites not aligning to the query:
7cqrA Complex structure of hppd with y16550
29% identity, 41% coverage: 351:607/629 of query aligns to 94:351/380 of 7cqrA
Sites not aligning to the query:
6jx9A Structure of y17107 complexed hppd (see paper)
29% identity, 41% coverage: 351:607/629 of query aligns to 94:351/380 of 6jx9A
Sites not aligning to the query:
>WP_013092162.1 NCBI__GCF_000092885.1:WP_013092162.1
MQRSIATVSISGTLVEKLSAIRAAGFEGVEIFENDLLYFDGSPADVRRIANDLGLKIMLF
QPFRDFDGVSPDRLERNLDRAKRKFDVMHELGTDRILVCSNVSPETICDDSLMIDQLGAL
ARAAEAAGVIAGYEALAWGKHVKTYRHAWKLVDAVNHPSLGLVLDSFHTLSLDDTPDAIA
DIPGERIAFVQIADAPKLAMDVLEWSRHYRCFPGQGDFDLANFTAQVVKSGYEGPLSLEI
FNDGFRAAPTTITAADGHRSLLFLEEQTRALLEEQQPQKMTGDLYRSPAAPAHVGYQFLE
FAVDHTTRAQLADWLGKLRFRQAGQHRSKDVTLYQHGAASIVLNAEPDSFANAFFQQHGL
SLCASAFRVDDASQAFERAAGFGYTPFSGQIGPNERVLPAVQAPDGSLNYFVDETPDQPT
LFEADFVLTDINGPTEVGPLERIDHVCLSVPASALDTWVLFLRTAFGFQAEPGVLVPDPY
GLVRSRALRSADGSVRIALNASVDRHTAVAEALHTYHGSGLNHVAFSTGDIFTAIAEFVA
DGVPILRIPRNYYDDLAARYALSDTLLEAMRANDILYDRDERGGEFFHAYTEQLDQRFFL
EIVERRGGYDGYGAANAAVRLAAQAQRRK
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SitesBLAST's database includes (1) SwissProt entries with experimentally-supported functional features; and (2) protein structures with bound ligands, from the BioLip database.
Lawrence Berkeley National Laboratory